eF-site ID 6ndc-ABCDEFGHIJKLMNOPQR PDB Code 6ndc Chain A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R click to enlarge Title RHODOCETIN IN COMPLEX WITH THE INTEGRIN ALPHA2-A DOMAIN WITH CHROMIUM BOUND Classification CELL ADHESION/TOXIN Compound Snaclec rhodocetin subunit gamma Source ORGANISM_COMMON: Malayan pit viper; ORGANISM_SCIENTIFIC: Calloselasma rhodostoma; Sequence A:  NCLPGWSAYDQHCYQAFNEPKTWDEAERFCTEQAKRGHLV SIGSDGEADFVAQLVTNNIKRPELYVWIGLRDRRKEQQCS SEWSMSASIIYVNWNTGESQMCQGLARWTGFRKWDYSDCQ AKNPFVCKFPS B:  CPLHWSSYNGYCYRVFSELKTWEDAESFCYAQHKGSRLAS IHSREEEAFVGKLASQTLKYTSMWLGLNNPWKECKWEWSD DAKLDYKVWLRRPYCAVMVVKTDRIFWFNRGCEKTVSFVC KF C:  LIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQV GLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTN TFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSM LKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKA IASIPTERYFFNVSDEAALLEKAGTLGEQIF D:  NCLPGWSAYDQHCYQAFNEPKTWDEAERFCTEQAKRGHLV SIGSDGEADFVAQLVTNNIKRPELYVWIGLRDRRKEQQCS SEWSMSASIIYVNWNTGESQMCQGLARWTGFRKWDYSDCQ AKNPFVCKFPS E:  CPLHWSSYNGYCYRVFSELKTWEDAESFCYAQHKGSRLAS IHSREEEAFVGKLASQTLKYTSMWLGLNNPWKECKWEWSD DAKLDYKVWLRRPYCAVMVVKTDRIFWFNRGCEKTVSFVC KF F:  LIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQV GLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTN TFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSM LKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKA IASIPTERYFFNVSDEAALLEKAGTLGEQIF G:  NCLPGWSAYDQHCYQAFNEPKTWDEAERFCTEQAKRGHLV SIGSDGEADFVAQLVTNNIKRPELYVWIGLRDRRKEQQCS SEWSMSASIIYVNWNTGESQMCQGLARWTGFRKWDYSDCQ AKNPFVCKFPS H:  CPLHWSSYNGYCYRVFSELKTWEDAESFCYAQHKGSRLAS IHSREEEAFVGKLASQTLKYTSMWLGLNNPWKECKWEWSD DAKLDYKVWLRRPYCAVMVVKTDRIFWFNRGCEKTVSFVC KF I:  LIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQV GLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTN TFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSM LKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKA IASIPTERYFFNVSDEAALLEKAGTLGEQIF J:  NCLPGWSAYDQHCYQAFNEPKTWDEAERFCTEQAKRGHLV SIGSDGEADFVAQLVTNNIKRPELYVWIGLRDRRKEQQCS SEWSMSASIIYVNWNTGESQMCQGLARWTGFRKWDYSDCQ AKNPFVCKFPS K:  CPLHWSSYNGYCYRVFSELKTWEDAESFCYAQHKGSRLAS IHSREEEAFVGKLASQTLKYTSMWLGLNNPWKECKWEWSD DAKLDYKVWLRRPYCAVMVVKTDRIFWFNRGCEKTVSFVC KF L:  LIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQV GLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTN TFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSM LKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKA IASIPTERYFFNVSDEAALLEKAGTLGEQIF M:  NCLPGWSAYDQHCYQAFNEPKTWDEAERFCTEQAKRGHLV SIGSDGEADFVAQLVTNNIKRPELYVWIGLRDRRKEQQCS SEWSMSASIIYVNWNTGESQMCQGLARWTGFRKWDYSDCQ AKNPFVCKFPS N:  CPLHWSSYNGYCYRVFSELKTWEDAESFCYAQHKGSRLAS IHSREEEAFVGKLASQTLKYTSMWLGLNNPWKECKWEWSD DAKLDYKVWLRRPYCAVMVVKTDRIFWFNRGCEKTVSFVC KF O:  LIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQV GLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTN TFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSM LKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKA IASIPTERYFFNVSDEAALLEKAGTLGEQIF P:  NCLPGWSAYDQHCYQAFNEPKTWDEAERFCTEQAKRGHLV SIGSDGEADFVAQLVTNNIKRPELYVWIGLRDRRKEQQCS SEWSMSASIIYVNWNTGESQMCQGLARWTGFRKWDYSDCQ AKNPFVCKFPS Q:  CPLHWSSYNGYCYRVFSELKTWEDAESFCYAQHKGSRLAS IHSREEEAFVGKLASQTLKYTSMWLGLNNPWKECKWEWSD DAKLDYKVWLRRPYCAVMVVKTDRIFWFNRGCEKTVSFVC KF R:  LIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQV GLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTN TFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSM LKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKA IASIPTERYFFNVSDEAALLEKAGTLGEQIF Description Functional site 1) chain A residue 19 type sequence F description binding site for residue SO4 A 201 source : AC1 2) chain A residue 20 type sequence N description binding site for residue SO4 A 201 source : AC1 3) chain A residue 21 type sequence E description binding site for residue SO4 A 201 source : AC1 4) chain A residue 73 type sequence R description binding site for residue SO4 A 202 source : AC2 5) chain A residue 75 type sequence R description binding site for residue SO4 A 202 source : AC2 6) chain C residue 182 type sequence S description binding site for residue CR C 401 source : AC3 7) chain C residue 184 type sequence S description binding site for residue CR C 401 source : AC3 8) chain C residue 283 type sequence D description binding site for residue CR C 401 source : AC3 9) chain B residue 92 type sequence R description binding site for residue SO4 C 402 source : AC4 10) chain B residue 114 type sequence K description binding site for residue SO4 C 402 source : AC4 11) chain C residue 248 type sequence D description binding site for residue SO4 C 402 source : AC4 12) chain C residue 250 type sequence T description binding site for residue SO4 C 402 source : AC4 13) chain C residue 183 type sequence N description binding site for residue NA C 403 source : AC5 14) chain C residue 184 type sequence S description binding site for residue NA C 403 source : AC5 15) chain C residue 339 type sequence R description binding site for residue CL C 404 source : AC6 16) chain O residue 339 type sequence R description binding site for residue CL C 404 source : AC6 17) chain D residue 19 type sequence F description binding site for residue SO4 D 201 source : AC7 18) chain D residue 20 type sequence N description binding site for residue SO4 D 201 source : AC7 19) chain D residue 17 type sequence Q description binding site for residue NH4 D 202 source : AC8 20) chain D residue 18 type sequence A description binding site for residue NH4 D 202 source : AC8 21) chain E residue 101 type sequence K description binding site for residue SO4 E 201 source : AC9 22) chain E residue 104 type sequence R description binding site for residue SO4 E 201 source : AC9 23) chain E residue 114 type sequence K description binding site for residue SO4 E 202 source : AD1 24) chain F residue 184 type sequence S description binding site for residue SO4 E 202 source : AD1 25) chain F residue 250 type sequence T description binding site for residue SO4 E 202 source : AD1 26) chain F residue 314 type sequence Y description binding site for residue SO4 E 202 source : AD1 27) chain F residue 321 type sequence D description binding site for residue CL F 401 source : AD2 28) chain F residue 180 type sequence D description binding site for residue CR F 402 source : AD3 29) chain F residue 182 type sequence S description binding site for residue CR F 402 source : AD3 30) chain F residue 184 type sequence S description binding site for residue CR F 402 source : AD3 31) chain F residue 250 type sequence T description binding site for residue CR F 402 source : AD3 32) chain F residue 283 type sequence D description binding site for residue CR F 402 source : AD3 33) chain F residue 182 type sequence S description binding site for residue NA F 403 source : AD4 34) chain F residue 184 type sequence S description binding site for residue NA F 403 source : AD4 35) chain C residue 260 type sequence R description binding site for residue CL G 201 source : AD5 36) chain G residue 7 type sequence G description binding site for residue CL G 201 source : AD5 37) chain G residue 19 type sequence F description binding site for residue SO4 G 202 source : AD6 38) chain G residue 20 type sequence N description binding site for residue SO4 G 202 source : AD6 39) chain G residue 21 type sequence E description binding site for residue SO4 G 202 source : AD6 40) chain H residue 114 type sequence K description binding site for residue SO4 H 201 source : AD7 41) chain I residue 184 type sequence S description binding site for residue SO4 H 201 source : AD7 42) chain I residue 250 type sequence T description binding site for residue SO4 H 201 source : AD7 43) chain I residue 321 type sequence D description binding site for residue CL I 401 source : AD8 44) chain I residue 180 type sequence D description binding site for residue CR I 402 source : AD9 45) chain I residue 182 type sequence S description binding site for residue CR I 402 source : AD9 46) chain I residue 184 type sequence S description binding site for residue CR I 402 source : AD9 47) chain I residue 250 type sequence T description binding site for residue CR I 402 source : AD9 48) chain I residue 283 type sequence D description binding site for residue CR I 402 source : AD9 49) chain I residue 182 type sequence S description binding site for residue NA I 403 source : AE1 50) chain I residue 184 type sequence S description binding site for residue NA I 403 source : AE1 51) chain J residue 19 type sequence F description binding site for residue SO4 J 201 source : AE2 52) chain J residue 20 type sequence N description binding site for residue SO4 J 201 source : AE2 53) chain J residue 21 type sequence E description binding site for residue SO4 J 201 source : AE2 54) chain J residue 73 type sequence R description binding site for residue CL J 202 source : AE3 55) chain J residue 75 type sequence R description binding site for residue CL J 202 source : AE3 56) chain K residue 14 type sequence R description binding site for residue CL K 201 source : AE4 57) chain K residue 92 type sequence R description binding site for residue SO4 K 202 source : AE5 58) chain K residue 114 type sequence K description binding site for residue SO4 K 202 source : AE5 59) chain L residue 248 type sequence D description binding site for residue SO4 K 202 source : AE5 60) chain L residue 250 type sequence T description binding site for residue SO4 K 202 source : AE5 61) chain L residue 182 type sequence S description binding site for residue CR L 401 source : AE6 62) chain L residue 184 type sequence S description binding site for residue CR L 401 source : AE6 63) chain L residue 283 type sequence D description binding site for residue CR L 401 source : AE6 64) chain L residue 184 type sequence S description binding site for residue NA L 402 source : AE7 65) chain M residue 102 type sequence Q description binding site for residue CL M 201 source : AE8 66) chain N residue 91 type sequence R description binding site for residue CL M 201 source : AE8 67) chain N residue 114 type sequence K description binding site for residue SO4 N 201 source : AE9 68) chain O residue 250 type sequence T description binding site for residue SO4 N 201 source : AE9 69) chain O residue 182 type sequence S description binding site for residue CR O 401 source : AF1 70) chain O residue 184 type sequence S description binding site for residue CR O 401 source : AF1 71) chain O residue 250 type sequence T description binding site for residue CR O 401 source : AF1 72) chain O residue 283 type sequence D description binding site for residue CR O 401 source : AF1 73) chain O residue 182 type sequence S description binding site for residue NA O 402 source : AF2 74) chain O residue 247 type sequence G description binding site for residue NA O 402 source : AF2 75) chain O residue 257 type sequence Q description binding site for residue SO4 O 403 source : AF3 76) chain O residue 260 type sequence R description binding site for residue SO4 O 403 source : AF3 77) chain O residue 261 type sequence K description binding site for residue SO4 O 403 source : AF3 78) chain O residue 298 type sequence Q description binding site for residue SO4 O 403 source : AF3 79) chain Q residue 8 type sequence Y description binding site for residue SO4 Q 201 source : AF4 80) chain Q residue 114 type sequence K description binding site for residue SO4 Q 202 source : AF5 81) chain R residue 250 type sequence T description binding site for residue SO4 Q 202 source : AF5 82) chain R residue 314 type sequence Y description binding site for residue SO4 Q 202 source : AF5 83) chain R residue 182 type sequence S description binding site for residue CR R 401 source : AF6 84) chain R residue 184 type sequence S description binding site for residue CR R 401 source : AF6 85) chain R residue 250 type sequence T description binding site for residue CR R 401 source : AF6 86) chain R residue 283 type sequence D description binding site for residue CR R 401 source : AF6 87) chain R residue 260 type sequence R description binding site for residue SO4 R 402 source : AF7 88) chain R residue 261 type sequence K description binding site for residue SO4 R 402 source : AF7 89) chain R residue 298 type sequence Q description binding site for residue SO4 R 402 source : AF7 90) chain R residue 182 type sequence S description binding site for residue NA R 404 source : AF8 91) chain R residue 184 type sequence S description binding site for residue NA R 404 source : AF8 92) chain R residue 247 type sequence G description binding site for residue NA R 404 source : AF8 93) chain B residue 95-120 type prosite sequence CAVMVVKTDRIFWFNRGCEKTVSFVC description C_TYPE_LECTIN_1 C-type lectin domain signature. CAvmvvktdrif..WFNRGCektvs.FVC source prosite : PS00615 94) chain C residue 343 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:16263699, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19349973 source Swiss-Prot : SWS_FT_FI1 95) chain F residue 343 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:16263699, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19349973 source Swiss-Prot : SWS_FT_FI1 96) chain I residue 343 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:16263699, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19349973 source Swiss-Prot : SWS_FT_FI1 97) chain L residue 343 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:16263699, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19349973 source Swiss-Prot : SWS_FT_FI1 98) chain O residue 343 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:16263699, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19349973 source Swiss-Prot : SWS_FT_FI1 99) chain R residue 343 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:16263699, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19349973 source Swiss-Prot : SWS_FT_FI1

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