eF-site ID 6nbh-ABGNPR
PDB Code 6nbh
Chain A, B, G, N, P, R

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Title Cryo-EM structure of parathyroid hormone receptor type 1 in complex with a long-acting parathyroid hormone analog and G protein
Classification SIGNALING PROTEIN
Compound Parathyroid hormone/parathyroid hormone-related peptide receptor
Source (6NBH)
Sequence A:  DQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGE
SGKSTIVKQTGIFETKFQVDKVNFHMFDVGGQRDERRKWI
QCFNDVTAIIFVVASSQTNRLQEALNLFKSIWNNRWLRTI
SVILFLNKQDLLAEKVLAIEDYFPEFARYTTPEDATPEPG
EDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDT
ENIRRVFNDCRDIIQRMHLRQYELL
B:  ELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGR
IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW
DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS
IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG
DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG
ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA
TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG
RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD
DGMAVATGSWDSFLKIWN
G:  TASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHA
KEDPLLTPVPASENPFR
N:  QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQA
PGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLY
LQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQ
GTQVTV
P:  AVAEIQLMHQRAKWIQDARRRAFLHKLIAEIHTA
R:  VMTKEEQIFLLHRAQAQCEKRLKEVLGRPCLPEWDHILCW
PLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVP
GHNRTWANYSECVKFLTNETREREVFDRLAMIYTVGYSVS
LASLTVAVLILAYFRRLHCTRNYIHMHLFLSFMLRAVSIF
VKDAVLYSGATLTAAAGYAGCRVAVTFFLYFLATNYYWIL
VEGLYLHSLIFMAFFSEKKYLWGFTVFGWGLPAVFVAVWV
SVRATLANTGCWDLSSGNKKWIIQVPILASIVLNFILFIN
IVRVLATKLRETNATRQQYRKLLKSTLVLMPLFGVHYIVF
MATPYTEVSGTLWQVQMHYEMLFNSFQGFFVAIIYCFCNG
EVQAEIKKSWSRWTLALDF
Description (1)  Parathyroid hormone/parathyroid hormone-related peptide receptor, Long-acting parathyroid hormone analog, Gs protein alpha subunit, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Nanobody-35


Functional site

1) chain R
residue 322
type
sequence W
description binding site for residue CLR R 601
source : AC1

2) chain R
residue 326
type
sequence V
description binding site for residue CLR R 601
source : AC1

3) chain R
residue 422
type
sequence I
description binding site for residue CLR R 602
source : AC2

4) chain R
residue 426
type
sequence A
description binding site for residue CLR R 602
source : AC2

5) chain R
residue 428
type
sequence P
description binding site for residue CLR R 602
source : AC2

6) chain R
residue 361
type
sequence W
description binding site for residue CLR R 603
source : AC3

7) chain R
residue 428
type
sequence P
description binding site for residue CLR R 603
source : AC3

8) chain R
residue 382
type
sequence V
description binding site for residue CLR R 604
source : AC4

9) chain R
residue 279
type
sequence A
description binding site for residue CLR R 605
source : AC5

10) chain R
residue 286
type
sequence T
description binding site for residue CLR R 605
source : AC5

11) chain R
residue 358
type
sequence N
description binding site for residue CLR R 606
source : AC6

12) chain R
residue 359
type
sequence K
description binding site for residue CLR R 606
source : AC6

13) chain R
residue 291
type
sequence F
description binding site for residue CLR R 607
source : AC7

14) chain R
residue 275
type
sequence A
description binding site for residue PLM R 608
source : AC8

15) chain R
residue 278
type
sequence Y
description binding site for residue PLM R 608
source : AC8

16) chain R
residue 108-132
type prosite
sequence CLPEWDHILCWPLGAPGEVVAVPCP
description G_PROTEIN_RECEP_F2_1 G-protein coupled receptors family 2 signature 1. ClpeWDhil.CWplGapgevvavpCP
source prosite : PS00649

17) chain R
residue 451-466
type prosite
sequence QGFFVAIIYCFCNGEV
description G_PROTEIN_RECEP_F2_2 G-protein coupled receptors family 2 signature 2. QGFFVaIIYCFcNgeV
source prosite : PS00650

18) chain B
residue 70-84
type prosite
sequence LVSASQDGKLIIWDS
description WD_REPEATS_1 Trp-Asp (WD) repeats signature. LVSAsqDgKLIIWDS
source prosite : PS00678

19) chain B
residue 157-171
type prosite
sequence IVTSSGDTTCALWDI
description WD_REPEATS_1 Trp-Asp (WD) repeats signature. LVSAsqDgKLIIWDS
source prosite : PS00678

20) chain B
residue 285-299
type prosite
sequence LLAGYDDFNCNVWDA
description WD_REPEATS_1 Trp-Asp (WD) repeats signature. LVSAsqDgKLIIWDS
source prosite : PS00678

21) chain A
residue 47
type BINDING
sequence G
description BINDING => ECO:0000305|PubMed:10427002, ECO:0000305|PubMed:11087399, ECO:0000305|PubMed:15591060, ECO:0000305|PubMed:16766715, ECO:0000305|PubMed:19243146, ECO:0000305|PubMed:9395396, ECO:0000305|PubMed:9417641
source Swiss-Prot : SWS_FT_FI1

22) chain A
residue 223
type BINDING
sequence D
description BINDING => ECO:0000305|PubMed:10427002, ECO:0000305|PubMed:11087399, ECO:0000305|PubMed:15591060, ECO:0000305|PubMed:16766715, ECO:0000305|PubMed:19243146, ECO:0000305|PubMed:9395396, ECO:0000305|PubMed:9417641
source Swiss-Prot : SWS_FT_FI1

23) chain A
residue 292
type BINDING
sequence N
description BINDING => ECO:0000305|PubMed:10427002, ECO:0000305|PubMed:11087399, ECO:0000305|PubMed:15591060, ECO:0000305|PubMed:16766715, ECO:0000305|PubMed:19243146, ECO:0000305|PubMed:9395396, ECO:0000305|PubMed:9417641
source Swiss-Prot : SWS_FT_FI1

24) chain A
residue 366
type BINDING
sequence A
description BINDING => ECO:0000305|PubMed:10427002, ECO:0000305|PubMed:11087399, ECO:0000305|PubMed:15591060, ECO:0000305|PubMed:16766715, ECO:0000305|PubMed:19243146, ECO:0000305|PubMed:9395396, ECO:0000305|PubMed:9417641
source Swiss-Prot : SWS_FT_FI1

25) chain R
residue 151
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI10

26) chain R
residue 161
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI10

27) chain R
residue 166
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI10

28) chain R
residue 176
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI10

29) chain A
residue 54
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:10427002, ECO:0000269|PubMed:11087399, ECO:0000269|PubMed:15591060, ECO:0000269|PubMed:19243146, ECO:0000269|PubMed:9395396, ECO:0000269|PubMed:9417641, ECO:0000305|PubMed:16766715
source Swiss-Prot : SWS_FT_FI2

30) chain A
residue 352
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:P63092
source Swiss-Prot : SWS_FT_FI3

31) chain R
residue 307-320
type MOD_RES
sequence HSLIFMAFFSEKKY
description Phosphoserine => ECO:0000250|UniProtKB:P63092
source Swiss-Prot : SWS_FT_FI3

32) chain R
residue 383-409
type MOD_RES
sequence RVLATKLRETNATRQQYRKLLKS
description Phosphoserine => ECO:0000250|UniProtKB:P63092
source Swiss-Prot : SWS_FT_FI3

33) chain A
residue 300
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P63092
source Swiss-Prot : SWS_FT_FI6

34) chain R
residue 410-428
type TRANSMEM
sequence TLVLMPLFGVHYIVFMATP
description Helical; Name=6 => ECO:0000255
source Swiss-Prot : SWS_FT_FI8

35) chain R
residue 441-463
type TRANSMEM
sequence MHYEMLFNSFQGFFVAIIYCFCN
description Helical; Name=7 => ECO:0000255
source Swiss-Prot : SWS_FT_FI9


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