eF-site ID 6nb6-C
PDB Code 6nb6
Chain C

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Title SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 1)
Classification VIRUS
Compound Spike glycoprotein
Source (6NB6)
Sequence C:  RCTTFNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFY
SNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVF
GSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAHTMI
FDNAFNCTFEYISDAFKHLREFVFKNKDGFLYVYKGYQPI
DVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSTSAA
AYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSV
KSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN
ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVS
ATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNY
KLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRP
FERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIG
YQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN
GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEI
LDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAI
HADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDI
PIGAGICASYHTVSSQKSIVAYTMSLGADSSIAYSNNTIA
IPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLL
LQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPT
LKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVYGECLGI
CAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGA
GAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA
ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNF
GAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQ
QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM
SFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFP
REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVI
GIINNTVYDPLQPEL
Description (1)  Spike glycoprotein, S230 heavy chain, S230 light chain


Functional site

1) chain C
residue 797
type SITE
sequence R
description Cleavage => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:19321428
source Swiss-Prot : SWS_FT_FI1

2) chain C
residue 29
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

3) chain C
residue 65
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

4) chain C
residue 73
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

5) chain C
residue 109
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

6) chain C
residue 118
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

7) chain C
residue 119
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

8) chain C
residue 158
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

9) chain C
residue 227
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

10) chain C
residue 269
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

11) chain C
residue 318
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

12) chain C
residue 330
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

13) chain C
residue 357
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

14) chain C
residue 589
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

15) chain C
residue 602
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

16) chain C
residue 691
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

17) chain C
residue 699
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

18) chain C
residue 783
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

19) chain C
residue 1056
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

20) chain C
residue 1080
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2

21) chain C
residue 1116
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099
source Swiss-Prot : SWS_FT_FI2


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