eF-site ID 6nb6-ABCHILM PDB Code 6nb6 Chain A, B, C, H, I, L, M Title SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 1) Classification VIRUS Compound Spike glycoprotein Source (6NB6) Sequence A:  RCTTTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNV TGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFGST MNNKSQSVIIINNSTNVVIRACNFELCDNPFFATHTMIFD NAFNCTFEYISDAFSNFKHLREFVFKNKDGFLYVYKGYQP IDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFAAYF VGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSF EIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATK FPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATK LNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLP DDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFER DISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQP YRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLT GTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDI SPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHAD QLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIG AGICASYHTVQKSIVAYTMSLGADSSIAYSNNTIAIPTNF SISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGS FCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG GFNFSQILPDPLKPTKRSFIEDLLFNKVQYGECLGLICAQ KFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAA LQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQ IQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAI SSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFP QAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREG VFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGII NNTVYDPLQPEL B:  RCTTNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYS NVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVFG STMNNKSQSVIIINNSTNVVIRACNFELCDNPFTHTMIFD NAFNCTFEYISDAFSNFKHLREFVFKNKDGFLYVYKGYQP IDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAAAYFV GYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFE IDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKF PSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKL NDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPD DFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERD ISNVPFSPDGKPCTPPALNCYWPLNDYGFQPYRVVVLSFE TVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPF QQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGT NASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNV FQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVQKSIV AYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAK TSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAE QDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPT KRSFIEDLLFNKVQKFNGLTVLPPLLTDDMIAAYTAALVS GTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYEN QKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQAL NTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITG RLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKR VDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAP AICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDN TFVSGNCDVVIGIINNTVYDPLQPEL C:  RCTTFNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFY SNVTGFHTINHTFDNPVIPFKDGIYFAATEKSNVVRGWVF GSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAHTMI FDNAFNCTFEYISDAFKHLREFVFKNKDGFLYVYKGYQPI DVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSTSAA AYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSV KSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFN ATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVS ATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNY KLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRP FERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIG YQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFN GLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEI LDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAI HADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDI PIGAGICASYHTVSSQKSIVAYTMSLGADSSIAYSNNTIA IPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLL LQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPT LKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVYGECLGI CAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGA GAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKA ISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNF GAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQ QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM SFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFP REGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVI GIINNTVYDPLQPEL H:  AQLVESGGALVQPGRSLRLSCAASGFTFRNYAMHWVRQAP ATGLQWLAVITSDGRNKFYADSVKGRFTISREDSKNTLYL QMDSLRGEDTAVYYCVTQRDNSRDYFPHYFHDMDVWGQGT TVA I:  QAQLVESGGALVQPGRSLRLSCAASGFTFRNYAMHWVRQA PATGLQWLAVITSDGRNKFYADSVKGRFTISREDSKNTLY LQMDSLRGEDTAVYYCVTQRDNSRDYFPHYFHDMDVWGQG TTVA L:  VLTQSPLSLPVTLGQPASISCRSSQSLVYSDGDTYLNWFQ QRPGQSPRRLIYQVSNRDSGVPDRFSGSGSGTDFTLKISR VEAEDVGVYYCMQGSHWPPTFGQGTKVEIK M:  VLTQSPLSLPVTLGQPASISCRSSQSLVYSDGDTYLNWFQ QRPGQSPRRLIYQVSNRDSGVPDRFSGSGSGTDFTLKISR VEAEDVGVYYCMQGSHWPPTFGQGTKVEI Description (1)  Spike glycoprotein, S230 heavy chain, S230 light chain Functional site 1) chain A residue 797 type SITE sequence R description Cleavage => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:19321428 source Swiss-Prot : SWS_FT_FI1 2) chain B residue 797 type SITE sequence R description Cleavage => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:19321428 source Swiss-Prot : SWS_FT_FI1 3) chain C residue 797 type SITE sequence R description Cleavage => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:19321428 source Swiss-Prot : SWS_FT_FI1 4) chain A residue 318 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 5) chain A residue 330 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 6) chain A residue 357 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 7) chain A residue 589 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 8) chain A residue 602 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 9) chain A residue 691 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 10) chain A residue 699 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 11) chain A residue 783 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 12) chain A residue 1056 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 13) chain A residue 1080 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 14) chain A residue 65 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 15) chain A residue 1116 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 16) chain B residue 29 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 17) chain B residue 65 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 18) chain B residue 73 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 19) chain B residue 109 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 20) chain B residue 118 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 21) chain B residue 119 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 22) chain A residue 73 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 23) chain B residue 158 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 24) chain B residue 227 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 25) chain B residue 269 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 26) chain B residue 318 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 27) chain B residue 330 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 28) chain B residue 357 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 29) chain B residue 589 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 30) chain B residue 602 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 31) chain B residue 691 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 32) chain B residue 699 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 33) chain A residue 109 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 34) chain B residue 783 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 35) chain B residue 1056 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 36) chain B residue 1080 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 37) chain B residue 1116 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 38) chain C residue 29 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 39) chain C residue 65 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 40) chain C residue 73 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 41) chain A residue 118 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 42) chain C residue 109 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 43) chain C residue 118 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 44) chain C residue 119 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 45) chain C residue 158 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 46) chain C residue 227 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 47) chain C residue 269 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 48) chain C residue 318 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 49) chain C residue 330 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 50) chain C residue 357 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 51) chain C residue 589 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 52) chain A residue 119 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 53) chain C residue 602 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 54) chain C residue 691 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 55) chain C residue 699 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 56) chain C residue 783 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 57) chain C residue 1056 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 58) chain C residue 1080 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 59) chain C residue 1116 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 60) chain A residue 158 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 61) chain A residue 227 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2 62) chain A residue 269 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099 source Swiss-Prot : SWS_FT_FI2

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