eF-site ID 6n7p-ABCDEFGHIKLMNOPQXY PDB Code 6n7p Chain A, B, C, D, E, F, G, H, I, K, L, M, N, O, P, Q, X, Y click to enlarge Title S. cerevisiae spliceosomal E complex (UBC4) Classification RNA BINDING PROTEIN Compound U1 small nuclear ribonucleoprotein 70 kDa homolog Source ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); Sequence A:  MNYNLSKYPDDVSRLFKPRPPLSYKRPTDYPYAKRQTNPN ITGVANLLSTSLKHYMEEFPEGSPNNHLQRYEDIKLSKIK NAQLLDRRLQNPNVDPHIKDTDPYRTIFIGRLPYDLDEIE LQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSK MAFKEIGVHRGIQIKDRICIVDIERG B:  RYYCEYCHSYLTHDTLSVRKSHLVGKNHLRITADYYRNKA RDIINKHNHKRRHIGKRGRKERENSSQNETLKVTCLSNKE KRHIMHVKKMNQKELAQTSIDTLKLLYDGSPGYSKVFVDA NRFDIGDLVKASKLPQRANEKSAHHSFKQTSRSRDETCES NPFPRLNNPKKLEPPKILSQWSNTIPKTSIFYSVD C:  SALYFQNLPSRPANKENYTRLLLKHINPNNKYAINPSLPL PHNKLLLDDQMGLLEVSISRSSKMTNQAFLTFVTQEEADR FLEKYTTTALKVQGRKVRMGKARTNSLLGLSIEMQKYNLD IKKVLKARKLKR D:  MDKYTALIHDENFSTLTLNVSRYPKSLAYWEKLLNYIVKA SAPICKSTEPQLLKLIRCTYSSMLNEFPYLENYYIDFALL EYKLGNVSMSHKIFQRGLQAFNQRSLLLWTSYLKFCNNVI SHQKQLFKKYETAEEYVGLHFFSGEFWDLYLEQISSRCTS SKKYWNVLRKILEIPLHSFSKFYALWLQRIDDIMDLKQLS QLTSKDELLKKLKIDINYSGRKGPYLQDAKKKLKKITKEM YMVVQYQVLEIYSIFESKIYINYYTSPETLVSSDEIETWI KYLDYTITLQTDSLTHLNFQRALLPLAHYDLVWIKYSKWL INSKNDLLGAKNVLLMGLKFSLKKTEIIKLLYSVICKLNE YVLLRNLLEKIESSYSDNVENVDDFEIFWDYLQFKTFCQN SLYSSRYSDSQSNGLLNKELFDKVWKRLSCKEKKSGQEIL LNNLVQFYSKDTVEFVEKNIFQKIIEFGWEYYLQNGMFWN CYCRLIYFDTSRSYLDKRQYIVRKIWPQIDKKFAQSVLPS LTEFCESYFPEEMDTLEEMFTEEP E:  ALRGLDTQFLQDNTALVQAYRGLDWSDISSLTQMVDVIEQ TVVKYGNPNDSIKLALETILWQILRKYPLLFGFWKRFATI EYQLFGLKKSIAVLATSVKWFPTSLELWCDYLNVLCVNNP NETDFIRNNFEIAKDLIGKQFLSHPFWDKFIEFEVGQKNW HNVQRIYEYIIEVPLHQYARFFTSYKKFLNEKNLKTTRNI DIVLRKTQTTVNEIWQFESKIKQPFFNLGQVLNDDLENWS RYLYHENTWMMYIKWLTKKNISDEVVVDIYQKANTFLPLD FKTLRYDFLRFLKRKYRSNNTLFNNIFNETVSRYLKIWPN DILLMTEYLCMLKRHSFKNSLDQSPKEILEKQTSFTKILE TSITNYINNQIDAKVHLQTLINDKNLSIVVVELIKTTWLV LKNNMQTRKYFNLYQKNILIKNSVPFWLTYYKFEKSNVNF TKLNKFIRELGVEIYLPTTVMNDILTDYKTFYLTHSNIVT YESSIIDSNTFDPILYPELKMSNPKYDPVDWHKKTEWKEA GHIGITTERPQISNSIIECNSGTLIQKPISLPNFRNLEKI NQVKINDLYTEEFLKE F:  NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQV TGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPT SGMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDE LRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGM QGFPIANSRVRLSWGRSAKQTALLQQAMLSNSLQVQQQQP GLQQPNYGYIPSSTCEANVSSTMLPGCQILNYSNPQQVIM QGSEAVVNSTNAMLNRLEQGSNGFMFA G:  QSFDIWKNLDRIRSTKKNAGQFIKGSLLILPMRTEDKQQF DECMDELHKYISKDILRCYPQKEQKDEGMLFYIVLKDFNI LDSCFVLSVLLAFQKRLWMAPSEKSYFRVPKNINLTGSFY LPKNIETGSSIVEVGFNVVPDFQQFQVKACHVSKFMNELS NFFSQVEFGKCEANVINYFKREYNRTYSQISLALYELPLI GDGLFDIKSYISKTRPIIETSKAQMIKHISEMKAYNEIS H:  MRDIVFVSPQLYLSSQEGWKSDSAKSGFIPILKNDLQRFQ DSLKHIVDARNSXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXX I:  MSTPAAEQRKLVEQLMGLHDPKICKSYLVGECPYDLFQGT KQSLGKCPQMHLTKHKIQYEREVKQGKTFPEFEREYLAIL SRFVNECNGQISVALQNLKHTAEERMKIQQVTEELDVLDL ISKRKEVAKRVRNITENVGQSAQQKLQVCEVCGAYLSRLD TDRRLADHFLGKIHLGYVKMREDYDRLMKNNR K:  IQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNL VLNECIEERVPKTQLDKLRPRTTLNIKVEKRVLGLTILRG EQILSTVVEDKPLLSKKERLVRDKKEKKQAQKQTKLRKEK EKK L:  MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAIL TDVKLTLPQPRLNKLNSNGIAMASLYLTGGQQPTASDNIA SLQYINIRGNTIRQIILPDSLNLDSLLVDQKQLNSLRRS M:  SSQIIDRPKHELSRAELEELEEFEFKHGPMSLINDAMVTR TPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKG KNVINRERFISKLFLRGDSVIVVLKTP N:  TMNGIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMN VQLRDVIATEPQGAVTHMDQIFVRGSQIKFIVVPDLLKNA PLFKKNSSRPMPP O:  AMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDE FMNVVIDEAVEIPVKGTPLGKILLKGDNITLITS P:  PVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNL QLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRELP Q:  VSTPELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLD DAMEINNNHQLGLQTVIRGNSIISLEALDAI X:  CKEMMPDIRTIGESVKAFEDDIKFLSEAIMNEYGHEDYFN NALLSTLNAVVVEQPQKQAAIALLTMVVNSKNNVAGKSII NYFFEELQKWCKQTYNDEFKSTSNETGPWNKIKLILRFLS ILSPMFLVDELINIYKSLFELSIELNNLDPGNRVPLSEAI YTNTLLNIPYLFFFNRNNDGLRTKVEELLAYVEQNYLVKT TDINLLREYNGEPPYEMVELVRVVLPNVKKALINNLEQLN ELFPDWNHLLTPQTGDEGFNDALTLPSVDDLKSFVRLNKN FGSVDSMWKTPRYAFHVYLPNSAGNFETVVPISTYAGQLF NDIIIDLVESLEFNRKEVARQVITLDLFFKAGIFTEPGES IAQLIATYEENPLAPTFKIEDLAIETILGLIFKLPSVSQP FAYFYTLLVDICQNSPKAIAPVFGRAFRFFYSHLDSLDFE LKLRYLDWFSIQMSNFNFSWKWNEWEDDSIKFGKYFYNPK VNFAKNLIQKELRLTSNFSEVEDSLPQEFTKYLDTSYIPR DQLINYYQSLFTGYTVEEDSVRKNDLYFRQEGVPMENTVR KILDYTHKANNSREVTELESILGELKNEYGSIISDFNRFV IILLVQAVTDSGSRSLSHANKYINDLKEDLKTIFAKIELD IETKEYIIIEAVLTFWNANPQTGFLVADAFKYAGLLTSRT IFTFIFNETGLKNNGLIEATAIEAVFRNLSQQISEENESG NNFEFVFERLCTIANSTIDLLDVNADEDIEIPKVNGEMDI DDIEDDKLDLKWKYFTVIGFIKSILRRYSHEYRELADKFI ANIDNAIPHESTRRTISNWIQETKEV Y:  DTPSRYLLRKARRNPNGLQELRESMKSSTIYVGNLSFYTS EEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSCPD EALNALKYLSDTKLDEKTITIDLDPGFEDGRQFGRGKSGG QVSDELRFDFDASRGGFA Description Functional site 1) chain B residue 6 type sequence C description binding site for residue ZN B 501 source : AC1 2) chain B residue 9 type sequence C description binding site for residue ZN B 501 source : AC1 3) chain B residue 24 type sequence H description binding site for residue ZN B 501 source : AC1 4) chain B residue 30 type sequence H description binding site for residue ZN B 501 source : AC1 5) chain I residue 45 type sequence C description binding site for residue ZN I 501 source : AC2 6) chain I residue 53 type sequence C description binding site for residue ZN I 501 source : AC2 7) chain I residue 68 type sequence C description binding site for residue ZN I 501 source : AC2 8) chain I residue 72 type sequence H description binding site for residue ZN I 501 source : AC2 9) chain I residue 201 type sequence C description binding site for residue ZN I 502 source : AC3 10) chain I residue 204 type sequence C description binding site for residue ZN I 502 source : AC3 11) chain I residue 220 type sequence H description binding site for residue ZN I 502 source : AC3 12) chain I residue 226 type sequence H description binding site for residue ZN I 502 source : AC3 13) chain Y residue 24 type BINDING sequence Y description BINDING => ECO:0000250 source Swiss-Prot : SWS_FT_FI1 14) chain Y residue 49 type BINDING sequence Y description BINDING => ECO:0000250 source Swiss-Prot : SWS_FT_FI1 15) chain Y residue 118 type BINDING sequence T description BINDING => ECO:0000250 source Swiss-Prot : SWS_FT_FI1 16) chain Y residue 129 type BINDING sequence R description BINDING => ECO:0000250 source Swiss-Prot : SWS_FT_FI1 17) chain Y residue 139 type BINDING sequence Q description BINDING => ECO:0000250 source Swiss-Prot : SWS_FT_FI1 18) chain H residue 1-4 type prosite sequence MRDI description TUBULIN_B_AUTOREG Tubulin-beta mRNA autoregulation signal. MRDI source prosite : PS00228

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