|
eF-site ID
|
6n62-F |
PDB Code
|
6n62 |
Chain
|
F |
|
click to enlarge
|
|
Title
|
Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA |
Classification
|
TRANSFERASE/DNA |
Compound
|
DNA-directed RNA polymerase subunit alpha |
Source
|
(6N62) |
|
Sequence
|
F: |
TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCS
VAEYPEAITYLLEQYNRVEAEEARLSDLITGFVDIDPELA
REKFAELRAQYVVTRDTIKHATAQEEILKLSEVFKQFRLV
PKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNF
ITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQ
KLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEA
NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK
LNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAK
EPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRA
ATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDV
TRERIRQIEAKALRKLRHPSRSEVLRSFLDD
|
|
Description
|
|
Functional site
|
|
1)
|
chain |
F |
residue |
562 |
type |
SITE |
sequence |
R
|
description |
Interaction with anti-sigma factors
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
2)
|
chain |
F |
residue |
403-416 |
type |
prosite |
sequence |
DLIQEGNIGLMKAV
|
description |
SIGMA70_1 Sigma-70 factors family signature 1. DLIQeGnIGLMkAV
|
source |
prosite : PS00715
|
|
3)
|
chain |
F |
residue |
572-598 |
type |
prosite |
sequence |
TLEEVGKQFDVTRERIRQIEAKALRKL
|
description |
SIGMA70_2 Sigma-70 factors family signature 2. TleEVGkqfdVTrerIrQIEakaLrkL
|
source |
prosite : PS00716
|
|
4)
|
chain |
F |
residue |
573-592 |
type |
DNA_BIND |
sequence |
LEEVGKQFDVTRERIRQIEA
|
description |
H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
|
|