eF-site ID 6n62-D PDB Code 6n62 Chain D click to enlarge Title Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA Classification TRANSFERASE/DNA Compound DNA-directed RNA polymerase subunit alpha Source (6N62) Sequence D:  EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDG LFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQT KVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE FDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRK KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE KRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQ GRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE LFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEV IREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCA AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPAN GEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAER LYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVG RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLK PTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIIS EAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSK AMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAA QIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS THGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG THEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTAD ILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVC AHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTSSIQ VKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRT KESYKVPYGAVLAKGDGEQVAGGETVANWDPHGGLPRVAD LFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGS DPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRL RGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRK ATIVNAGSSDVEYSRVKIANRELEANGKVGATYSRDLLGI TKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKE NVIVGRLIPAGTGYAYHQDRMRRRAA Description Functional site 1) chain D residue 460 type sequence D description binding site for residue MG D 1501 source : AC1 2) chain D residue 462 type sequence D description binding site for residue MG D 1501 source : AC1 3) chain D residue 464 type sequence D description binding site for residue MG D 1501 source : AC1 4) chain D residue 70 type sequence C description binding site for residue ZN D 1502 source : AC2 5) chain D residue 72 type sequence C description binding site for residue ZN D 1502 source : AC2 6) chain D residue 85 type sequence C description binding site for residue ZN D 1502 source : AC2 7) chain D residue 87 type sequence K description binding site for residue ZN D 1502 source : AC2 8) chain D residue 88 type sequence C description binding site for residue ZN D 1502 source : AC2 9) chain D residue 814 type sequence C description binding site for residue ZN D 1503 source : AC3 10) chain D residue 888 type sequence C description binding site for residue ZN D 1503 source : AC3 11) chain D residue 895 type sequence C description binding site for residue ZN D 1503 source : AC3 12) chain D residue 898 type sequence C description binding site for residue ZN D 1503 source : AC3 13) chain D residue 983 type MOD_RES sequence K description N6-acetyllysine => ECO:0000255|HAMAP-Rule:MF_01322, ECO:0000269|PubMed:18723842 source Swiss-Prot : SWS_FT_FI3 14) chain D residue 85 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 15) chain D residue 88 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 16) chain D residue 895 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 17) chain D residue 898 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 18) chain D residue 460 type DNA_BIND sequence D description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 19) chain D residue 462 type DNA_BIND sequence D description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 20) chain D residue 464 type DNA_BIND sequence D description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 21) chain D residue 814 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 22) chain D residue 888 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 23) chain D residue 72 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1

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