eF-site ID 6n62-C
PDB Code 6n62
Chain C

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Title Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA
Classification TRANSFERASE/DNA
Compound DNA-directed RNA polymerase subunit alpha
Source (6N62)
Sequence C:  YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD
PEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDV
QECQIRGVTYSAPLRVKLRLVIYEREGTVKDIKEQEVYMG
EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTH
SSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLP
ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER
LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI
EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL
SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE
IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKF
NRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI
DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD
TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT
HKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE
GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY
LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF
SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM
QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ
YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI
NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM
PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL
GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG
KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS
GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ
ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE
EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG
VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDM
PYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG
DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS
DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLP
TSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY
TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNV
LLKEIRSLGINIELEDE
Description


Functional site

1) chain C
residue 1063-1075
type prosite
sequence GDKMAGRHGNKGV
description RNA_POL_BETA RNA polymerases beta chain signature. GdKMAGrHGNKGV
source prosite : PS01166


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