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eF-site ID
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6n62-C |
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PDB Code
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6n62 |
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Chain
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C |
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click to enlarge
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Title
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Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA |
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Classification
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TRANSFERASE/DNA |
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Compound
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DNA-directed RNA polymerase subunit alpha |
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Source
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(6N62) |
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Sequence
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C: |
YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD
PEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDV
QECQIRGVTYSAPLRVKLRLVIYEREGTVKDIKEQEVYMG
EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTH
SSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLP
ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER
LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI
EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL
SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE
IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKF
NRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI
DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD
TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT
HKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE
GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY
LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF
SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM
QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ
YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI
NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM
PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL
GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG
KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS
GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ
ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE
EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG
VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDM
PYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG
DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS
DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLP
TSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY
TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNV
LLKEIRSLGINIELEDE
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Description
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Functional site
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1)
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chain |
C |
| residue |
1063-1075 |
| type |
prosite |
| sequence |
GDKMAGRHGNKGV
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| description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKMAGrHGNKGV
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| source |
prosite : PS01166
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