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eF-site ID
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6n61-C |
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PDB Code
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6n61 |
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Chain
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C |
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click to enlarge
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Title
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Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Capistruin |
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Classification
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TRANSFERASE/DNA |
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Compound
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DNA-directed RNA polymerase subunit alpha |
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Source
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(A0A096YQF1_BURTA) |
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Sequence
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C: |
VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ
DPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD
VQECQIRGVTYSAPLRVKLRLVIYEREGTVKDIKEQEVYM
GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKT
HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL
PATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE
RLRGETASFDIYVEKGRRITARHIRQLEKDDVKLIEVPVE
YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGH
KRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM
RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL
REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN
RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQ
DMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI
SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG
LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE
EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV
DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV
PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS
RIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC
VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY
NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI
TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK
GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID
VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG
LFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ
LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV
KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN
GTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINA
MLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM
RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQI
RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM
LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEI
RSLGINIELEDE
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Description
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Functional site
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1)
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chain |
C |
| residue |
139 |
| type |
|
| sequence |
N
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| description |
binding site for residue EDO C 1401
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| source |
: AC1
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2)
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chain |
C |
| residue |
140 |
| type |
|
| sequence |
G
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| description |
binding site for residue EDO C 1401
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| source |
: AC1
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3)
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chain |
C |
| residue |
141 |
| type |
|
| sequence |
T
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| description |
binding site for residue EDO C 1401
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| source |
: AC1
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4)
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chain |
C |
| residue |
758 |
| type |
|
| sequence |
R
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| description |
binding site for residue EDO C 1401
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| source |
: AC1
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5)
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chain |
C |
| residue |
1051 |
| type |
|
| sequence |
K
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| description |
binding site for residue EDO C 1401
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| source |
: AC1
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6)
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chain |
C |
| residue |
1063-1075 |
| type |
prosite |
| sequence |
GDKMAGRHGNKGV
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| description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKMAGrHGNKGV
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| source |
prosite : PS01166
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