eF-site ID 6n60-D PDB Code 6n60 Chain D click to enlarge Title Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Microcin J25 (MccJ25) Classification TRANSFERASE/DNA Compound DNA-directed RNA polymerase subunit alpha Source (6N60) Sequence D:  EFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDG LFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQT KVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDI ERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE FDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRK KLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPL DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE KRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQ GRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE LFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEV IREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCA AYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPAN GEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAER LYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVG RAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLK PTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIIS EAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSK AMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAA QIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS THGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCG THEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTAD ILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVC AHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTF HISSIQVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLI DEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTG GLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLV ITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEA PHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVI VRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANG KVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAA VAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRR Description Functional site 1) chain D residue 460 type sequence D description binding site for residue MG D 1501 source : AC1 2) chain D residue 462 type sequence D description binding site for residue MG D 1501 source : AC1 3) chain D residue 464 type sequence D description binding site for residue MG D 1501 source : AC1 4) chain D residue 70 type sequence C description binding site for residue ZN D 1502 source : AC2 5) chain D residue 72 type sequence C description binding site for residue ZN D 1502 source : AC2 6) chain D residue 85 type sequence C description binding site for residue ZN D 1502 source : AC2 7) chain D residue 88 type sequence C description binding site for residue ZN D 1502 source : AC2 8) chain D residue 814 type sequence C description binding site for residue ZN D 1503 source : AC3 9) chain D residue 816 type sequence T description binding site for residue ZN D 1503 source : AC3 10) chain D residue 883 type sequence R description binding site for residue ZN D 1503 source : AC3 11) chain D residue 888 type sequence C description binding site for residue ZN D 1503 source : AC3 12) chain D residue 895 type sequence C description binding site for residue ZN D 1503 source : AC3 13) chain D residue 898 type sequence C description binding site for residue ZN D 1503 source : AC3 14) chain D residue 895 type SITE sequence C description Essential for permeation into bacteria => ECO:0000269|PubMed:18632663 source Swiss-Prot : SWS_FT_FI1 15) chain D residue 898 type SITE sequence C description Essential for permeation into bacteria => ECO:0000269|PubMed:18632663 source Swiss-Prot : SWS_FT_FI1 16) chain D residue 462 type SITE sequence D description Essential for permeation into bacteria => ECO:0000269|PubMed:18632663 source Swiss-Prot : SWS_FT_FI1 17) chain D residue 464 type SITE sequence D description Essential for permeation into bacteria => ECO:0000269|PubMed:18632663 source Swiss-Prot : SWS_FT_FI1 18) chain D residue 814 type SITE sequence C description Essential for permeation into bacteria => ECO:0000269|PubMed:18632663 source Swiss-Prot : SWS_FT_FI1 19) chain D residue 888 type SITE sequence C description Essential for permeation into bacteria => ECO:0000269|PubMed:18632663 source Swiss-Prot : SWS_FT_FI1

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