eF-site ID 6mv9-A
PDB Code 6mv9
Chain A

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Title X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP and ADP
Classification OXIDOREDUCTASE
Compound Ribonucleoside-diphosphate reductase
Source (A0A162Q3J9_BACIU)
Sequence A:  KWIQLNNEIMIQKDGKFQFDKDKEAVHSYFVDYINQNTVF
FHNLKEKLDYLVENQYYEEEFLSLYSFEDIKEVFKTAYAK
KFRFPSFMSAFKFYNDYALKTNDKKKILERYEDRISIVAL
FFANGDTEKAKEYVNLMINQEYQPSTPTFLNAGRKRRGEL
VSCFLLEVNDSLNDISRAIDISMQLSKLGGGVSLNLSKLR
AKGEAIKDVENATKGVVGVMKLLDNAFRYADQMGQRQGSG
AAYLNIFHRDINDFLDTKKISAVKTLSIGVVIPDKFVELA
REDKAAYVFYPHTIYKEYGQHMDEMDMNEMYDKFVDNPRV
KKEKINPRKLLEKLAMLRSESGYPYIMFQDNVNKVHANNH
ISKVKFSNLCSEVLQASQVSSYTDYDEEDEIGLDISCNLG
SLNILNVMEHKSIEKTVKLATDSLTHVSETTDIRNAPAVR
RANKAMKSIGLGAMNLHGYLAQNGIAYESPEARDFANTFF
MMVNFYSIQRSAEIAKEKGETFDQYEGSTYATGEYFDKYV
STDFSPKYEKIANLFEGMHIPTTEDWKKLKAFVAEHGMYH
SYRLCIAPTGSISYVQSSTASVMPIMERIEEKTYYPMPGL
ASNNWFFYKEAYDMDMFKVVDMIATIQQHIDQGISFTLFL
KDTMTTRDLNRIDLYAHHRGIKTIYYASCLSCVV
Description


Functional site

1) chain A
residue 177
type
sequence D
description binding site for residue TTP A 801
source : AC1

2) chain A
residue 178
type
sequence S
description binding site for residue TTP A 801
source : AC1

3) chain A
residue 179
type
sequence L
description binding site for residue TTP A 801
source : AC1

4) chain A
residue 182
type
sequence I
description binding site for residue TTP A 801
source : AC1

5) chain A
residue 207
type
sequence R
description binding site for residue TTP A 801
source : AC1

6) chain A
residue 213
type
sequence I
description binding site for residue TTP A 801
source : AC1

7) chain A
residue 214
type
sequence K
description binding site for residue TTP A 801
source : AC1

8) chain A
residue 220
type
sequence T
description binding site for residue TTP A 801
source : AC1

9) chain A
residue 221
type
sequence K
description binding site for residue TTP A 801
source : AC1

10) chain A
residue 33
type
sequence V
description binding site for residue ADP A 802
source : AC2

11) chain A
residue 34
type
sequence H
description binding site for residue ADP A 802
source : AC2

12) chain A
residue 37
type
sequence F
description binding site for residue ADP A 802
source : AC2

13) chain A
residue 42
type
sequence N
description binding site for residue ADP A 802
source : AC2

14) chain A
residue 89
type
sequence F
description binding site for residue ADP A 802
source : AC2

15) chain A
residue 90
type
sequence R
description binding site for residue ADP A 802
source : AC2

16) chain A
residue 91
type
sequence F
description binding site for residue ADP A 802
source : AC2

17) chain A
residue 194
type
sequence K
description binding site for residue TTP B 801
source : AC4

18) chain A
residue 236
type
sequence Y
description binding site for residue TTP B 801
source : AC4

19) chain A
residue 237
type
sequence A
description binding site for residue TTP B 801
source : AC4

20) chain A
residue 380
type ACT_SITE
sequence N
description Proton acceptor => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

21) chain A
residue 384
type ACT_SITE
sequence E
description Proton acceptor => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

22) chain A
residue 382
type ACT_SITE
sequence C
description Cysteine radical intermediate => ECO:0000250
source Swiss-Prot : SWS_FT_FI2

23) chain A
residue 153
type BINDING
sequence T
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

24) chain A
residue 169
type BINDING
sequence S
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

25) chain A
residue 198
type BINDING
sequence G
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

26) chain A
residue 380
type BINDING
sequence N
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

27) chain A
residue 580
type BINDING
sequence P
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

28) chain A
residue 170
type SITE
sequence C
description Important for hydrogen atom transfer => ECO:0000250
source Swiss-Prot : SWS_FT_FI4

29) chain A
residue 409
type SITE
sequence C
description Important for hydrogen atom transfer => ECO:0000250
source Swiss-Prot : SWS_FT_FI4

30) chain A
residue 695
type SITE
sequence C
description Interacts with thioredoxin/glutaredoxin => ECO:0000250
source Swiss-Prot : SWS_FT_FI7

31) chain A
residue 698
type SITE
sequence C
description Interacts with thioredoxin/glutaredoxin => ECO:0000250
source Swiss-Prot : SWS_FT_FI7

32) chain A
residue 177
type SITE
sequence D
description Allosteric effector binding => ECO:0000250
source Swiss-Prot : SWS_FT_FI5

33) chain A
residue 207
type SITE
sequence R
description Allosteric effector binding => ECO:0000250
source Swiss-Prot : SWS_FT_FI5

34) chain A
residue 683
type SITE
sequence Y
description Important for electron transfer => ECO:0000250
source Swiss-Prot : SWS_FT_FI6

35) chain A
residue 684
type SITE
sequence Y
description Important for electron transfer => ECO:0000250
source Swiss-Prot : SWS_FT_FI6

36) chain A
residue 558-580
type prosite
sequence WKKLKAFVAEHGMYHSYRLCIAP
description RIBORED_LARGE Ribonucleotide reductase large subunit signature. WkkLkafvaehGMYHsyrLCiaP
source prosite : PS00089


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