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eF-site ID
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6mji-ABCD |
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PDB Code
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6mji |
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Chain
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A, B, C, D |
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click to enlarge
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Title
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Crystal structure of the mCD1d/xxs (JJ304) /iNKTCR ternary complex |
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Classification
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IMMUNE SYSTEM |
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Compound
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T cell receptor alpha variable 11,T cell receptor alpha joining 18,Human nkt tcr alpha chain, CHIMERIC PROTEIN |
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Source
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(B2MG_MOUSE) |
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Sequence
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A: |
KNYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSA
TISFTKPWSQGKLSNQQWEKLQHMFQVYRVSFTRDIQELV
KMMSPKEDYPIEIQLSAGCEMYPGNASESFLHVAFQGKYV
VRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSATVQMLLN
DTCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPGHRQLVCH
VSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQA
TLDVEAGEEAGLACRVKHSSLGGQDIILYW
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| B: |
QKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLK
NGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACR
VKHASMAEPKTVYWDRD
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| C: |
KTQVEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWFKQDT
GKGLVSLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITAT
LLDDTATYICVVGDRGSALGRLHFGAGTQLIVIPDIQNPD
PAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITD
KCVLDMRSMDFKSNSAVAWSNKDFACANAFNNSIIPEDTF
FPS
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| D: |
AAVTQSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGH
GLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELA
TPSQTSVYFCASGDEGYTQYFGPGTRLLVLEDLRNVTPPK
VSLFEPSKAEISHTQKATLVCLATGFYPDHVELSWWVNGK
EVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNP
RNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRA
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Description
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Functional site
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1)
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chain |
A |
| residue |
7 |
| type |
CARBOHYD |
| sequence |
N
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| description |
N-linked (GlcNAc...) asparagine => ECO:0000255
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| source |
Swiss-Prot : SWS_FT_FI3
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2)
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chain |
A |
| residue |
110 |
| type |
CARBOHYD |
| sequence |
N
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| description |
N-linked (GlcNAc...) asparagine => ECO:0000255
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| source |
Swiss-Prot : SWS_FT_FI3
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|
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3)
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chain |
B |
| residue |
78-84 |
| type |
prosite |
| sequence |
YACRVKH
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| description |
IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACRVKH
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| source |
prosite : PS00290
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4)
|
chain |
A |
| residue |
153 |
| type |
BINDING |
| sequence |
D
|
| description |
BINDING => ECO:0000269|PubMed:16002697, ECO:0000269|PubMed:16007091, ECO:0000269|PubMed:16314439, ECO:0000269|PubMed:16537470, ECO:0007744|PDB:1Z5L, ECO:0007744|PDB:1ZHN, ECO:0007744|PDB:2AKR, ECO:0007744|PDB:2FIK
|
| source |
Swiss-Prot : SWS_FT_FI2
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|
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5)
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chain |
A |
| residue |
20 |
| type |
CARBOHYD |
| sequence |
N
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| description |
N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:16002697, ECO:0000269|PubMed:16007091, ECO:0000269|PubMed:16537470
|
| source |
Swiss-Prot : SWS_FT_FI4
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6)
|
chain |
A |
| residue |
42 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:16002697, ECO:0000269|PubMed:16007091, ECO:0000269|PubMed:16537470
|
| source |
Swiss-Prot : SWS_FT_FI4
|
|
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7)
|
chain |
A |
| residue |
165 |
| type |
CARBOHYD |
| sequence |
N
|
| description |
N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:16002697, ECO:0000269|PubMed:16007091, ECO:0000269|PubMed:16537470
|
| source |
Swiss-Prot : SWS_FT_FI4
|
|
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8)
|
chain |
A |
| residue |
80 |
| type |
BINDING |
| sequence |
D
|
| description |
BINDING => ECO:0000269|PubMed:16002697, ECO:0000269|PubMed:16314439, ECO:0000269|PubMed:16537470, ECO:0007744|PDB:1Z5L, ECO:0007744|PDB:2AKR, ECO:0007744|PDB:2FIK
|
| source |
Swiss-Prot : SWS_FT_FI1
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