eF-site ID 6md1-B
PDB Code 6md1
Chain B

click to enlarge
Title Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with GW9662 and Oleic acid
Classification TRANSCRIPTION
Compound Peroxisome proliferator-activated receptor gamma
Source (PPARG_HUMAN)
Sequence B:  ESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSP
FVIYDMNSLMMGEDKIKFHIKEVAIRIFQGCQFRSVEAVQ
EITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLM
NKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKF
NALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLL
QALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQ
VIKKTETHPLLQEIYKD
Description


Functional site

1) chain B
residue 281
type
sequence I
description binding site for residue OLA B 502
source : AC2

2) chain B
residue 287
type
sequence F
description binding site for residue OLA B 502
source : AC2

3) chain B
residue 288
type
sequence R
description binding site for residue OLA B 502
source : AC2

4) chain B
residue 291
type
sequence E
description binding site for residue OLA B 502
source : AC2

5) chain B
residue 341
type
sequence I
description binding site for residue OLA B 502
source : AC2

6) chain B
residue 342
type
sequence S
description binding site for residue OLA B 502
source : AC2

7) chain B
residue 343
type
sequence E
description binding site for residue OLA B 502
source : AC2

8) chain B
residue 364
type
sequence M
description binding site for residue OLA B 502
source : AC2

9) chain B
residue 281
type
sequence I
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

10) chain B
residue 282
type
sequence F
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

11) chain B
residue 283
type
sequence Q
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

12) chain B
residue 284
type
sequence G
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

13) chain B
residue 286
type
sequence Q
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

14) chain B
residue 287
type
sequence F
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

15) chain B
residue 288
type
sequence R
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

16) chain B
residue 289
type
sequence S
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

17) chain B
residue 323
type
sequence H
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

18) chain B
residue 326
type
sequence I
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

19) chain B
residue 327
type
sequence Y
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

20) chain B
residue 330
type
sequence L
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

21) chain B
residue 363
type
sequence F
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

22) chain B
residue 449
type
sequence H
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

23) chain B
residue 475
type
sequence D
description binding site for Di-peptide GW9 B 501 and CYS B 285
source : AC3

24) chain B
residue 224
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:36737649
source Swiss-Prot : SWS_FT_FI2

25) chain B
residue 286
type BINDING
sequence Q
description BINDING => ECO:0000269|PubMed:9744270, ECO:0007744|PDB:2PRG
source Swiss-Prot : SWS_FT_FI1

26) chain B
residue 323
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:9744270, ECO:0007744|PDB:2PRG
source Swiss-Prot : SWS_FT_FI1

27) chain B
residue 449
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:9744270, ECO:0007744|PDB:2PRG
source Swiss-Prot : SWS_FT_FI1

28) chain B
residue 473
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:9744270, ECO:0007744|PDB:2PRG
source Swiss-Prot : SWS_FT_FI1


Display surface

Download
Links