|
|
eF-site ID
|
6kbx-B |
|
PDB Code
|
6kbx |
|
Chain
|
B |
|
click to enlarge
|
|
|
Title
|
Crystal structure of yedK in complex with ssDNA containing abasic site |
|
Classification
|
DNA BINDING PROTEIN |
|
Compound
|
SOS response-associated protein |
|
Source
|
(6KBX) |
|
|
Sequence
|
B: |
CGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPG
TKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETA
ATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRA
DGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHD
RRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSW
HPVSRAVGNVKNQGAELIQPVLEVLF
|
|
|
Description
|
|
Functional site
|
|
|
1)
|
chain |
B |
| residue |
2 |
| type |
MOD_RES |
| sequence |
C
|
| description |
Thiazolidine linkage to a ring-opened DNA abasic site => ECO:0000269|PubMed:31235915, ECO:0000269|PubMed:31504793
|
| source |
Swiss-Prot : SWS_FT_FI5
|
|
|
2)
|
chain |
B |
| residue |
2 |
| type |
ACT_SITE |
| sequence |
C
|
| description |
Nucleophile => ECO:0000269|PubMed:31235915, ECO:0000269|PubMed:31504793
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
3)
|
chain |
B |
| residue |
105 |
| type |
ACT_SITE |
| sequence |
E
|
| description |
ACT_SITE => ECO:0000305|PubMed:35934051, ECO:0000305|PubMed:37519246
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
|
4)
|
chain |
B |
| residue |
105 |
| type |
SITE |
| sequence |
E
|
| description |
Required for sensing abasic sites => ECO:0000269|PubMed:31504793
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
5)
|
chain |
B |
| residue |
160 |
| type |
SITE |
| sequence |
H
|
| description |
Required to stabilize abasic sites => ECO:0000269|PubMed:31235915
|
| source |
Swiss-Prot : SWS_FT_FI4
|
|
|
|