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eF-site ID
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6jnx-C |
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PDB Code
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6jnx |
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Chain
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C |
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click to enlarge
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Title
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Cryo-EM structure of a Q-engaged arrested complex |
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Classification
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TRANSCRIPTION,DNA,RNA |
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Compound
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DNA-directed RNA polymerase subunit alpha |
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Source
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(M1FPN0_9CAUD) |
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Sequence
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C: |
VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ
DPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD
VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE
VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK
GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR
RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL
VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD
VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL
LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS
ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG
RMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE
VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL
GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL
SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI
ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD
EIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE
SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM
GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG
GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ
NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR
VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR
DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD
ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP
NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS
EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG
LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD
LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP
IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA
KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL
STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL
GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD
KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY
GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPE
SFNVLLKEIRSLGINIELED
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Description
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Functional site
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1)
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chain |
C |
| residue |
1063-1075 |
| type |
prosite |
| sequence |
GDKMAGRHGNKGV
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| description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKMAGrHGNKGV
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| source |
prosite : PS01166
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