eF-site ID 6jmr-BCDEF
PDB Code 6jmr
Chain B, C, D, E, F

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Title CD98hc extracellular domain bound to HBJ127 Fab and MEM-108 Fab
Classification MEMBRANE PROTEIN/IMMUNE SYSTEM
Compound Antibody
Source (6JMR)
Sequence B:  CRELPAQKWWHTGALYRIGDLQAFQGHGAGNLAGLKGRLD
YLSSLKVKGLVLGPIHKNQKDDVAQTDLLQIDPNFGSKED
FDSLLQSAKKKSIRVILDLTPNYRGENSWFSTQVDTVATK
VKDALEFWLQAGVDGFQVRDIENLKDASSFLAEWQNITKG
FSEDRLLIAGTNSSDLQQILSLLESNKDLLLTSSYLSDSG
STGEHTKSLVTQYLNATGNRWCSWSLSQARLLTSFLPAQL
LRLYQLMLFTLPGTPVFSYGDEIGLDAAALPGQPMEAPVM
LWDESSFPDIPGAVSANMTVKGQSEDPGSLLSLFRRLSDQ
RSKERSLLHGDFHAFSAGPGLFSYIRHWDQNERFLVVLNF
GDVGLSAGLQASDLPASASLPAKADLLLSTQPGREEGSPL
ELERLKLEPHEGLLLRFPYAA
C:  QVQLKESGPGLVAPSQSLSITCTVSGFPLTXXXXXWVRQP
PGKGLEWLGXXXXXXXXXXXXXXXXRLSISKDNSKSQVFL
KMNSLQTDDTARYYCARXXXXXXXXXXWGQGTSVTVSSAK
TTPPSVYPLAPGSSMVTLGCLVKGYFPEPVTVTWNSGSLS
SGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHP
ASSTKVDKKIVPRD
D:  DIVMSQSPSSLVVSVGEKVTMSCXXXXXXXXXXXXXXXXX
WYQQKPGQSPKLLIYXXXXXXXGVPDRFTGSGSGTDFTLT
ISSVKAEDLAVYYCXXXXXXXXXFGGGTKLEIKRADAAPT
VSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE
RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTC
EATHKTSTSPIVKSFNRNE
E:  QVKLLESGPGLVQPSQSLSITCTVSGFSLTTYGIHWVRQP
PGKGLEWLGVIWSNGRIDYNAAFISRLSITKDNSKSQVFF
KMNSLQDDDTAIYYCARNVYDSLTWFTYWGQGTLVTVSAA
KTTPPSVYPLAPGSSMVTLGCLVKGYFPEPVTVTWNSGSL
SSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAH
PASSTKVDKKIVPRD
F:  DIQMTQSPSSLAVSVGEKVTMTCKSSQSLLYSSNQKNYLA
WYQQKPGQSPKLLIFWASTRESGVPDRFTGSGSGTDFPLT
ISSVKAEDLAVYFCQQYTSYPTFGGGTKLEIKRADAAPTV
SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCE
ATHKTSTSPIVKSFNRNE
Description (1)  Antibody, 4F2 cell-surface antigen heavy chain


Functional site

1) chain D
residue 198-204
type prosite
sequence YTCEATH
description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YTCEATH
source prosite : PS00290

2) chain F
residue 197-203
type prosite
sequence YTCEATH
description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YTCEATH
source prosite : PS00290

3) chain B
residue 424
type CARBOHYD
sequence N
description N-linked (GlcNAc...) (complex) asparagine => ECO:0000269|PubMed:12754519, ECO:0000269|PubMed:16335952, ECO:0000269|PubMed:19139490, ECO:0000269|PubMed:19349973, ECO:0000269|PubMed:30867591, ECO:0000269|PubMed:33298890, ECO:0000269|PubMed:33758168, ECO:0000269|PubMed:34880232, ECO:0000269|PubMed:35352032, ECO:0007744|PDB:6IRS, ECO:0007744|PDB:7CMI, ECO:0007744|PDB:7DSK, ECO:0007744|PDB:7EPZ, ECO:0007744|PDB:7P9V
source Swiss-Prot : SWS_FT_FI10

4) chain B
residue 506
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19349973, ECO:0000269|PubMed:30867591, ECO:0000269|PubMed:33298890, ECO:0000269|PubMed:33758168, ECO:0000269|PubMed:34880232, ECO:0000269|PubMed:35352032, ECO:0007744|PDB:6IRS, ECO:0007744|PDB:7CMH, ECO:0007744|PDB:7DSK, ECO:0007744|PDB:7EPZ, ECO:0007744|PDB:7P9V
source Swiss-Prot : SWS_FT_FI11

5) chain B
residue 406
type MOD_RES
sequence S
description Phosphoserine => ECO:0000305|PubMed:19065266
source Swiss-Prot : SWS_FT_FI7

6) chain B
residue 408
type MOD_RES
sequence S
description Phosphoserine => ECO:0000305|PubMed:19065266
source Swiss-Prot : SWS_FT_FI7

7) chain B
residue 410
type MOD_RES
sequence S
description Phosphoserine => ECO:0000305|PubMed:19065266
source Swiss-Prot : SWS_FT_FI7

8) chain B
residue 527
type MOD_RES
sequence S
description Phosphoserine => ECO:0000305|PubMed:19065266
source Swiss-Prot : SWS_FT_FI7

9) chain B
residue 531
type MOD_RES
sequence S
description Phosphoserine => ECO:0000305|PubMed:19065266
source Swiss-Prot : SWS_FT_FI7

10) chain B
residue 365
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:12754519, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19349973, ECO:0000269|PubMed:30867591, ECO:0000269|PubMed:33298890, ECO:0000269|PubMed:33758168, ECO:0000269|PubMed:34880232, ECO:0000269|PubMed:35352032, ECO:0007744|PDB:6IRS, ECO:0007744|PDB:7CMI, ECO:0007744|PDB:7DSK, ECO:0007744|PDB:7EPZ, ECO:0007744|PDB:7P9V
source Swiss-Prot : SWS_FT_FI8

11) chain B
residue 381
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:12754519, ECO:0000269|PubMed:16335952, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19349973, ECO:0000269|PubMed:30867591, ECO:0000269|PubMed:33298890, ECO:0000269|PubMed:33758168, ECO:0000269|PubMed:34880232, ECO:0000269|PubMed:35352032, ECO:0007744|PDB:6IRS, ECO:0007744|PDB:7CMI, ECO:0007744|PDB:7DSK, ECO:0007744|PDB:7EPZ, ECO:0007744|PDB:7P9V
source Swiss-Prot : SWS_FT_FI9


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