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eF-site ID
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6j9f-C |
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PDB Code
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6j9f |
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Chain
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C |
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click to enlarge
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Title
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Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 |
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Classification
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TRANSCRIPTION |
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Compound
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DNA-directed RNA polymerase subunit alpha |
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Source
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(Q8LTJ5_9CAUD) |
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Sequence
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C: |
SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLDL
GLHAALKSVFPISSYSGNAALEYVGYKLGQPVFDERECRQ
RGMSYGAPLRVTVRLVIYDRESSTKAIKYVKEQEVYLGEI
PLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSS
GKLLYSARIIPYRGSWLDFEFDPKDALFTRIDRRRKLPVS
ILLRALGYNNEEMLAEFFEINTFHIVQLELVPERLRGETL
NFDLADGDKVIVEAGKRITARHVKQLEAAGVAALAVPDDY
LVGRILSHDVVDGSTGELLANANDEISEDQLTAFRKAGVD
AVGTLWVNDLDRGPYLSNTLRIDPTKTQLEALVEIYRMMR
PGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGR
KDVLGESVLYDKKYFAERNDEESKRLVAEHTDTSDILEVI
KVLTEIRNGRGVVDDIDHLGNRRVRSVGEMAENVFRVGLV
RVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSS
QLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRD
VHPTHYGRVCTIETPEGPNIGLINSLAVFARTNQYGFLET
PYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNML
TEQFVPCRFQGESLLKPPSEVHFMDVSPMQTVSVAAALVP
FLEHDDANRALMGANMQRQAVPTLRSQKPLVGTGIERAVA
RDSGVTVNALRGGVIEQIDAARIVVKVNEAEIAGVDIYNL
IKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGE
LALGQNMLIAFMPWNGYNFEDSILLSERVVEEDRYTTIHI
EELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVVYI
GAEVRAGDIMVGKVTPKGSDVKDSSLRVPPGMDGTVIDVQ
VFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILEAAIY
ARLRSQIVGKIERAQKQIQAHEKEFEARFADKRGKITQGD
DLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVV
PVEDMPYMATGESVDIVLNPLGVPSRMNIGQILEVHLGWA
AKGLGRKIQRMLEAQAAVSELRKFLDDIYNHDQRVDLSQF
SDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELADL
PQSGQTQLYDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA
YTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFN
VLVKEIRSLAIHMELE
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Description
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Functional site
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1)
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chain |
C |
| residue |
1104-1116 |
| type |
prosite |
| sequence |
GDKMAGRHGNKGV
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| description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKMAGrHGNKGV
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| source |
prosite : PS01166
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