eF-site ID 6j9f-ABCDEJ PDB Code 6j9f Chain A, B, C, D, E, J Title Cryo-EM structure of Xanthomonos oryzae transcription elongation complex with the bacteriophage protein P7 Classification TRANSCRIPTION Compound DNA-directed RNA polymerase subunit alpha Source (Q8LTJ5_9CAUD) Sequence A:  PRGPQIERLTDNRAKVVIEPLERGYGHTLGNALRRVLLSS IPGFAITEVEIDGVLHEYTTVEGLQEDVLDVLLNLKDVAI RMHSGDSATLSLSKQGPGTVTAADIRTDHNVEIINGDHVI CHLTKDTALNMRLKIERGFGYQPAAARRRTIGRLMLDASF SPVRRVAYAVEAARVEQRTDLDKLVIDIETNGTIDAEEAV RTAADILSDQLSVFG B:  LRPRGPQIERLTDNRAKVVIEPLERGYGHTLGNALRRVLL SSIPGFAITEVEIDGVLHEYTTVEGLQEDVLDVLLNLKDV AIRMHSGDSATLSLSKQVTAADIRTDHNVEIINGDHVICH LTKDTALNMRLKIERGFGYQPALMLDASFSPVRRVAYAVE AARVEQRTDLDKLVIDIETNGTIDAEEAVRTAADILSDQL SVF C:  SYSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLDL GLHAALKSVFPISSYSGNAALEYVGYKLGQPVFDERECRQ RGMSYGAPLRVTVRLVIYDRESSTKAIKYVKEQEVYLGEI PLMTGNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSS GKLLYSARIIPYRGSWLDFEFDPKDALFTRIDRRRKLPVS ILLRALGYNNEEMLAEFFEINTFHIVQLELVPERLRGETL NFDLADGDKVIVEAGKRITARHVKQLEAAGVAALAVPDDY LVGRILSHDVVDGSTGELLANANDEISEDQLTAFRKAGVD AVGTLWVNDLDRGPYLSNTLRIDPTKTQLEALVEIYRMMR PGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNRRVGR KDVLGESVLYDKKYFAERNDEESKRLVAEHTDTSDILEVI KVLTEIRNGRGVVDDIDHLGNRRVRSVGEMAENVFRVGLV RVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSS QLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRD VHPTHYGRVCTIETPEGPNIGLINSLAVFARTNQYGFLET PYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNML TEQFVPCRFQGESLLKPPSEVHFMDVSPMQTVSVAAALVP FLEHDDANRALMGANMQRQAVPTLRSQKPLVGTGIERAVA RDSGVTVNALRGGVIEQIDAARIVVKVNEAEIAGVDIYNL IKYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGE LALGQNMLIAFMPWNGYNFEDSILLSERVVEEDRYTTIHI EELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVVYI GAEVRAGDIMVGKVTPKGSDVKDSSLRVPPGMDGTVIDVQ VFTRDGIEKDKRARQIEENEIKRVKKDFDDQFRILEAAIY ARLRSQIVGKIERAQKQIQAHEKEFEARFADKRGKITQGD DLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVV PVEDMPYMATGESVDIVLNPLGVPSRMNIGQILEVHLGWA AKGLGRKIQRMLEAQAAVSELRKFLDDIYNHDQRVDLSQF SDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELADL PQSGQTQLYDGRTGEAFDRKTTVGYMHYLKLNHLVDDKMH ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA YTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFN VLVKEIRSLAIHMELE D:  MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKK PETINYRTFKPERDGLFCAAIFGPIKDYECLCGKYKRMKH RGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL PSRIGLMLDMTLRDIERVLYFEAYVVTRRQLLTEEQYLTA RQEYNDDFDAAMGAEAVYELLRTIDLQSEMTRLREEIAST GSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPVLPPD LRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAP DIIVRNEKRMLQESVDALLDNGRRGRAIKRPLKSLADMIK GKQGRFRQNLLGKRVDYSGRSVITVGPYLKLHQCGLPKKM ALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDIL EEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPL VCTAFNADFDGDQMAVHVPLSLEAQLEARALMMSTNNILS PANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSE VKRAYDNRVVELHAKVKVRITQVDVDKRTSGTSIVDTTVG RALLSEILPEGLPFQLANTEMTKKNISRLINSSYRLLGLK DTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILT EAEAEVLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAK AMMDTIGTEKVENAKGETIDQKSMNSLYIMADSGARGSQA QIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNS THGARKGLADTALKTANSGYLTRRLVDVAQDVVITEIDCG TTEGLIMTPIVEGGDVVEPLKERVLGRVVAEDVVTRNTLL DEAWVAKLEDASVQSVKVRSTISCESSFGVCARCYGRDLA RGHQVNIGEAVGVIAAQSIGEPGTQLTDNITVKTTGSVKF NNLKSVAHASGSLVAVSRSGELSVLDGHGRERERYKLPYG ATITAKDGDAVKAGQSVANWDPGLPRVADLFEARKPKDPA ILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQ IIVFEGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVK EIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSKFL NGEQVERQRVIEENARLVKRNELPAKYDPVLLGITKASLA TESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGR LIPAGTGLAYHAGRR E:  VEDCLEVVNNRFELVMMASKRARQLANGVQPLIKPTVMAL REIAARRIDNALIDEVEKAERERA J:  NEFTQISGYVNAFGSQRGSVLTVKVENDEGWTLVEEDFDR ADYGSDPEFVAEVSSYLKRNGGIKDL Description Functional site 1) chain D residue 460 type sequence D description binding site for residue MG D 1501 source : AC1 2) chain D residue 462 type sequence D description binding site for residue MG D 1501 source : AC1 3) chain D residue 464 type sequence D description binding site for residue MG D 1501 source : AC1 4) chain D residue 70 type sequence C description binding site for residue ZN D 1502 source : AC2 5) chain D residue 72 type sequence C description binding site for residue ZN D 1502 source : AC2 6) chain D residue 85 type sequence C description binding site for residue ZN D 1502 source : AC2 7) chain D residue 88 type sequence C description binding site for residue ZN D 1502 source : AC2 8) chain D residue 815 type sequence C description binding site for residue ZN D 1503 source : AC3 9) chain D residue 890 type sequence C description binding site for residue ZN D 1503 source : AC3 10) chain D residue 897 type sequence C description binding site for residue ZN D 1503 source : AC3 11) chain D residue 900 type sequence C description binding site for residue ZN D 1503 source : AC3 12) chain C residue 1104-1116 type prosite sequence GDKMAGRHGNKGV description RNA_POL_BETA RNA polymerases beta chain signature. GdKMAGrHGNKGV source prosite : PS01166 13) chain D residue 897 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 14) chain D residue 900 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 15) chain D residue 460 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 16) chain D residue 462 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 17) chain D residue 464 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 18) chain D residue 815 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 19) chain D residue 890 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 20) chain D residue 70 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 21) chain D residue 72 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 22) chain D residue 85 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 23) chain D residue 88 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1

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