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eF-site ID
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6j6n-T |
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PDB Code
|
6j6n |
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Chain
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T |
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click to enlarge
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Title
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Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom |
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Classification
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SPLICING |
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Compound
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Pre-mRNA-splicing factor 8 |
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Source
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ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae S288c; |
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Sequence
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T: |
MPRIKTRRSKPAPDGFEKIKPTLTDFEIQLRDAQKDKSSK
LAAKSNEQLWEIMQLHHQRSRYIYTLYYKRKAISKDLYDW
LIKEKYADKLLIAKWRKTGYEKLCCLRCIQKNETNNGSTC
ICRVPRAQLEEEARKKGTQVSFHQCVHCGCRGCASTD
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Description
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(1) |
Pre-mRNA-splicing factor 8, Pre-mRNA-splicing factor SNU114, Pre-mRNA-splicing factor CWC21, Pre-mRNA-splicing factor PRP46, Pre-mRNA-processing protein 45, Pre-mRNA-splicing factor SLT11, Pre-mRNA-splicing factor CWC2, Pre-mRNA-splicing factor CWC15, Pre-mRNA-splicing factor BUD31, Pre-mRNA-splicing factor CWC22, Pre-mRNA-splicing factor CEF1, Pre-mRNA-splicing factor CLF1, Pre-mRNA-splicing factor SYF2, Pre-mRNA-processing factor 17, Pre-mRNA-splicing factor ISY1, Pre-mRNA-splicing factor SYF1, U2 small nuclear ribonucleoprotein B'', U2 small nuclear ribonucleoprotein A', Pre-mRNA-splicing factor SNT309, Small nuclear ribonucleoprotein E, Small nuclear ribonucleoprotein Sm D1, Small nuclear ribonucleoprotein G, Small nuclear ribonucleoprotein F, Small nuclear ribonucleoprotein Sm D2, Small nuclear ribonucleoprotein-associated protein B, Small nuclear ribonucleoprotein Sm D3, Pre-mRNA-processing factor 19/RNA Complex
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Functional site
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1)
|
chain |
T |
| residue |
104 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN T 1000
|
| source |
: AC7
|
|
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2)
|
chain |
T |
| residue |
105 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN T 1000
|
| source |
: AC7
|
|
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3)
|
chain |
T |
| residue |
108 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN T 1000
|
| source |
: AC7
|
|
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4)
|
chain |
T |
| residue |
148 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN T 1000
|
| source |
: AC7
|
|
|
5)
|
chain |
T |
| residue |
104 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN T 1001
|
| source |
: AC8
|
|
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6)
|
chain |
T |
| residue |
122 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN T 1001
|
| source |
: AC8
|
|
|
7)
|
chain |
T |
| residue |
150 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN T 1001
|
| source |
: AC8
|
|
|
8)
|
chain |
T |
| residue |
153 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN T 1001
|
| source |
: AC8
|
|
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9)
|
chain |
T |
| residue |
108 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN T 1002
|
| source |
: AC9
|
|
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10)
|
chain |
T |
| residue |
120 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN T 1002
|
| source |
: AC9
|
|
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11)
|
chain |
T |
| residue |
122 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN T 1002
|
| source |
: AC9
|
|
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12)
|
chain |
T |
| residue |
145 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN T 1002
|
| source |
: AC9
|
|
|
13)
|
chain |
T |
| residue |
148 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN T 1002
|
| source |
: AC9
|
|
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14)
|
chain |
T |
| residue |
103-125 |
| type |
prosite |
| sequence |
LCCLRCIQKNETNNGSTCICRVP
|
| description |
G10_1 G10 protein signature 1. LCClRCiqknEtNngstCiCRVP
|
| source |
prosite : PS00997
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|
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15)
|
chain |
T |
| residue |
145-154 |
| type |
prosite |
| sequence |
CVHCGCRGCA
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| description |
G10_2 G10 protein signature 2. CvHCGCRGCA
|
| source |
prosite : PS00998
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