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eF-site ID
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6j6n-O |
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PDB Code
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6j6n |
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Chain
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O |
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click to enlarge
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Title
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Cryo-EM structure of the yeast B*-b1 complex at an average resolution of 3.86 angstrom |
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Classification
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SPLICING |
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Compound
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Pre-mRNA-splicing factor 8 |
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Source
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ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae S288c; |
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Sequence
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O: |
SAFVNKIFQPEVAEELIVNRYEKLLSQRPEWHAPWKLSRV
INGHLGWVRCVAIDPVDNEWFITGSNDTTMKVWDLATGKL
KTTLAGHVMTVRDVAVSDRHPYLFSVSEDKTVKCWDLEKN
QIIRDYYGHLSGVRTVSIHPTLDLIATAGRDSVIKLWDMR
TRIPVITLVGHKGPINQVQCTPVDPQVVSSSTDATVRLWD
VVAGKTMKVLTHHKRSVRATALHPKEFSVASACTDDIRSW
GLAEGSLLTNFESEKTGIINTLSINQDDVLFAGGDNGVLS
FYDYKSGHKYQSLATREMVGSLEGERSVLCSTFDKTGLRL
ITGEADKSIKIWKQDETATKESEPGLAWNPNLSAKRF
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Description
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(1) |
Pre-mRNA-splicing factor 8, Pre-mRNA-splicing factor SNU114, Pre-mRNA-splicing factor CWC21, Pre-mRNA-splicing factor PRP46, Pre-mRNA-processing protein 45, Pre-mRNA-splicing factor SLT11, Pre-mRNA-splicing factor CWC2, Pre-mRNA-splicing factor CWC15, Pre-mRNA-splicing factor BUD31, Pre-mRNA-splicing factor CWC22, Pre-mRNA-splicing factor CEF1, Pre-mRNA-splicing factor CLF1, Pre-mRNA-splicing factor SYF2, Pre-mRNA-processing factor 17, Pre-mRNA-splicing factor ISY1, Pre-mRNA-splicing factor SYF1, U2 small nuclear ribonucleoprotein B'', U2 small nuclear ribonucleoprotein A', Pre-mRNA-splicing factor SNT309, Small nuclear ribonucleoprotein E, Small nuclear ribonucleoprotein Sm D1, Small nuclear ribonucleoprotein G, Small nuclear ribonucleoprotein F, Small nuclear ribonucleoprotein Sm D2, Small nuclear ribonucleoprotein-associated protein B, Small nuclear ribonucleoprotein Sm D3, Pre-mRNA-processing factor 19/RNA Complex
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Functional site
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1)
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chain |
O |
| residue |
239-253 |
| type |
prosite |
| sequence |
IATAGRDSVIKLWDM
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| description |
WD_REPEATS_1 Trp-Asp (WD) repeats signature. IATAgrDsVIKLWDM
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| source |
prosite : PS00678
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2)
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chain |
O |
| residue |
281-295 |
| type |
prosite |
| sequence |
VVSSSTDATVRLWDV
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| description |
WD_REPEATS_1 Trp-Asp (WD) repeats signature. IATAgrDsVIKLWDM
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| source |
prosite : PS00678
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