|
|
eF-site ID
|
6ilm-F |
|
PDB Code
|
6ilm |
|
Chain
|
F |
|
click to enlarge
|
|
|
Title
|
Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 7.4 |
|
Classification
|
VIRUS |
|
Compound
|
Capsid protein VP1 |
|
Source
|
ORGANISM_SCIENTIFIC: Echovirus E6; |
|
|
Sequence
|
F: |
IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL
KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC
RVNHVTLSQPKIVKWDRDM
|
|
|
Description
|
(1) |
Capsid protein VP1 (E.C.3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48), Capsid protein VP2 (E.C.3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48), Capsid protein VP3 (E.C.3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48), Capsid protein VP4 (E.C.3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48), FcRn heavy chain, FcRn light chain
|
|
Functional site
|
|
|
1)
|
chain |
F |
| residue |
78-84 |
| type |
prosite |
| sequence |
YACRVNH
|
| description |
IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACRVNH
|
| source |
prosite : PS00290
|
|
|
2)
|
chain |
F |
| residue |
2 |
| type |
MOD_RES |
| sequence |
Q
|
| description |
Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
3)
|
chain |
F |
| residue |
1 |
| type |
CARBOHYD |
| sequence |
I
|
| description |
N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis => ECO:0000269|PubMed:7918443
|
| source |
Swiss-Prot : SWS_FT_FI2
|
|
|
4)
|
chain |
F |
| residue |
19 |
| type |
CARBOHYD |
| sequence |
K
|
| description |
N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
5)
|
chain |
F |
| residue |
41 |
| type |
CARBOHYD |
| sequence |
K
|
| description |
N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
6)
|
chain |
F |
| residue |
48 |
| type |
CARBOHYD |
| sequence |
K
|
| description |
N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
7)
|
chain |
F |
| residue |
58 |
| type |
CARBOHYD |
| sequence |
K
|
| description |
N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
8)
|
chain |
F |
| residue |
91 |
| type |
CARBOHYD |
| sequence |
K
|
| description |
N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
9)
|
chain |
F |
| residue |
94 |
| type |
CARBOHYD |
| sequence |
K
|
| description |
N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
|
| source |
Swiss-Prot : SWS_FT_FI3
|
|
|
|