|
|
eF-site ID
|
6ilm-A |
|
PDB Code
|
6ilm |
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Chain
|
A |
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click to enlarge
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Title
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Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 7.4 |
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Classification
|
VIRUS |
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Compound
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Capsid protein VP1 |
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Source
|
ORGANISM_SCIENTIFIC: Echovirus E6; |
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Sequence
|
A: |
NDVQNAIDRAVVRVADTMPSGPSNSESIPALTAAETGHTS
QVVPSDTIQTRHVRNFHVRSESSVENFLSRSACVYIVEYK
TRDDTPDKMYDSWVINTRQVAQLRRKLEFFTYVRFDVEVT
FVITSVQDDSTRQNTDTPALTHQIMYVPPGGPIPQAVDDY
NWQTSTNPSVFWTEGNAPPRMSIPFMSVGNAYSNFYDGWS
HFSQTGVYGFNTLNNMGKLYFRHVNDKTISPITSKVRIYF
KPKHVKAWVPRPPRLCEYTHKDNVDFEPKGVTTSRTQLTI
SNSTHVENY
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|
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Description
|
(1) |
Capsid protein VP1 (E.C.3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48), Capsid protein VP2 (E.C.3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48), Capsid protein VP3 (E.C.3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48), Capsid protein VP4 (E.C.3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48), FcRn heavy chain, FcRn light chain
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Functional site
|
|
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1)
|
chain |
A |
| residue |
97 |
| type |
|
| sequence |
T
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
2)
|
chain |
A |
| residue |
115 |
| type |
|
| sequence |
F
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
3)
|
chain |
A |
| residue |
146 |
| type |
|
| sequence |
Y
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
4)
|
chain |
A |
| residue |
183 |
| type |
|
| sequence |
I
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
5)
|
chain |
A |
| residue |
192 |
| type |
|
| sequence |
Y
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
6)
|
chain |
A |
| residue |
194 |
| type |
|
| sequence |
N
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
7)
|
chain |
A |
| residue |
216 |
| type |
|
| sequence |
M
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
8)
|
chain |
A |
| residue |
219 |
| type |
|
| sequence |
L
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
9)
|
chain |
A |
| residue |
14 |
| type |
|
| sequence |
V
|
| description |
binding site for residue K A 302
|
| source |
: AC2
|
|
|
10)
|
chain |
A |
| residue |
16 |
| type |
|
| sequence |
D
|
| description |
binding site for residue K A 302
|
| source |
: AC2
|
|
|
11)
|
chain |
A |
| residue |
55 |
| type |
|
| sequence |
N
|
| description |
binding site for residue K A 302
|
| source |
: AC2
|
|
|
12)
|
chain |
A |
| residue |
31 |
| type |
|
| sequence |
L
|
| description |
binding site for residue NA D 101
|
| source |
: AC3
|
|
|
|