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eF-site ID
|
6ilj-A |
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PDB Code
|
6ilj |
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Chain
|
A |
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click to enlarge
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Title
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Cryo-EM structure of Echovirus 6 complexed with its attachment receptor CD55 at PH 5.5 |
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Classification
|
VIRUS |
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Compound
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Capsid protein VP1 |
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Source
|
ORGANISM_SCIENTIFIC: Echovirus E6; |
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Sequence
|
A: |
VVRVADTMPSGPSNSESIPALTAAETGHTSQVVPSDTIQT
RHVRNFHVRSESSVENFLSRSACVYIVEYKTRDDTPDKMY
DSWVINTRQVAQLRRKLEFFTYVRFDVEVTFVITSVQDDS
TRQNTDTPALTHQIMYVPPGGPIPQAVDDYNWQTSTNPSV
FWTEGNAPPRMSIPFMSVGNAYSNFYDGWSHFSQTGVYGF
NTLNNMGKLYFRHVNDKTISPITSKVRIYFKPKHVKAWVP
RPPRLCEYTHKDNVDFEPKGVTTSRTQLTISNSTHVEN
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|
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Description
|
(1) |
Capsid protein VP1 (E.C.3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48), Capsid protein VP2 (E.C.3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48), Capsid protein VP3 (E.C.3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48), Genome polyprotein (E.C.3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48), Complement decay-accelerating factor
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Functional site
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|
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1)
|
chain |
A |
| residue |
95 |
| type |
|
| sequence |
I
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
2)
|
chain |
A |
| residue |
97 |
| type |
|
| sequence |
T
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
3)
|
chain |
A |
| residue |
115 |
| type |
|
| sequence |
F
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
4)
|
chain |
A |
| residue |
146 |
| type |
|
| sequence |
Y
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
5)
|
chain |
A |
| residue |
168 |
| type |
|
| sequence |
P
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
6)
|
chain |
A |
| residue |
183 |
| type |
|
| sequence |
I
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
7)
|
chain |
A |
| residue |
192 |
| type |
|
| sequence |
Y
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
8)
|
chain |
A |
| residue |
194 |
| type |
|
| sequence |
N
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
9)
|
chain |
A |
| residue |
240 |
| type |
|
| sequence |
F
|
| description |
binding site for residue SPH A 301
|
| source |
: AC1
|
|
|
|