eF-site ID 6i4n_8-AB
PDB Code 6i4n
Model 8
Chain A, B

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Title Dodecamer DNA containing the synthetic base pair P-Z in complex with a pyrrole-imidazole polyamide
Classification DNA
Compound DNA (5'-D(*CP*GP*AP*TP*(DP)P*TP*AP*(DZ)P*AP*TP*CP*G)-3')
Source (6I4N)
Sequence A:  CGATXTAXATCG
B:  CGATXTAXATCG
Description (1)  9TK-PYB-PYB-PYB-4FO-IMT-PYB-PYB-PYB-BAL-DIB/DNA Complex


Functional site

1) chain A
residue 5
type
sequence X
description binding site for residue K4Z B 101
source : AC1

2) chain A
residue 6
type
sequence T
description binding site for residue K4Z B 101
source : AC1

3) chain A
residue 7
type
sequence A
description binding site for residue K4Z B 101
source : AC1

4) chain A
residue 8
type
sequence X
description binding site for residue K4Z B 101
source : AC1

5) chain A
residue 9
type
sequence A
description binding site for residue K4Z B 101
source : AC1

6) chain A
residue 10
type
sequence T
description binding site for residue K4Z B 101
source : AC1

7) chain B
residue 16
type
sequence T
description binding site for residue K4Z B 101
source : AC1

8) chain B
residue 17
type
sequence X
description binding site for residue K4Z B 101
source : AC1

9) chain B
residue 18
type
sequence T
description binding site for residue K4Z B 101
source : AC1

10) chain B
residue 19
type
sequence A
description binding site for residue K4Z B 101
source : AC1

11) chain B
residue 20
type
sequence X
description binding site for residue K4Z B 101
source : AC1

12) chain B
residue 21
type
sequence A
description binding site for residue K4Z B 101
source : AC1

13) chain B
residue 22
type
sequence T
description binding site for residue K4Z B 101
source : AC1

14) chain A
residue 7
type
sequence A
description binding site for Di-nucleotide DT B 16 and DP B 17
source : AC2

15) chain A
residue 8
type
sequence X
description binding site for Di-nucleotide DT B 16 and DP B 17
source : AC2

16) chain A
residue 9
type
sequence A
description binding site for Di-nucleotide DT B 16 and DP B 17
source : AC2

17) chain B
residue 15
type
sequence A
description binding site for Di-nucleotide DT B 16 and DP B 17
source : AC2

18) chain B
residue 18
type
sequence T
description binding site for Di-nucleotide DT B 16 and DP B 17
source : AC2

19) chain A
residue 6
type
sequence T
description binding site for Di-nucleotide DP B 17 and DT B 18
source : AC3

20) chain A
residue 7
type
sequence A
description binding site for Di-nucleotide DP B 17 and DT B 18
source : AC3

21) chain A
residue 8
type
sequence X
description binding site for Di-nucleotide DP B 17 and DT B 18
source : AC3

22) chain B
residue 16
type
sequence T
description binding site for Di-nucleotide DP B 17 and DT B 18
source : AC3

23) chain B
residue 19
type
sequence A
description binding site for Di-nucleotide DP B 17 and DT B 18
source : AC3

24) chain A
residue 4
type
sequence T
description binding site for Di-nucleotide DA B 19 and DZ B 20
source : AC4

25) chain A
residue 5
type
sequence X
description binding site for Di-nucleotide DA B 19 and DZ B 20
source : AC4

26) chain A
residue 6
type
sequence T
description binding site for Di-nucleotide DA B 19 and DZ B 20
source : AC4

27) chain A
residue 7
type
sequence A
description binding site for Di-nucleotide DA B 19 and DZ B 20
source : AC4

28) chain B
residue 18
type
sequence T
description binding site for Di-nucleotide DA B 19 and DZ B 20
source : AC4

29) chain B
residue 21
type
sequence A
description binding site for Di-nucleotide DA B 19 and DZ B 20
source : AC4

30) chain A
residue 3
type
sequence A
description binding site for Di-nucleotide DZ B 20 and DA B 21
source : AC5

31) chain A
residue 4
type
sequence T
description binding site for Di-nucleotide DZ B 20 and DA B 21
source : AC5

32) chain A
residue 5
type
sequence X
description binding site for Di-nucleotide DZ B 20 and DA B 21
source : AC5

33) chain B
residue 19
type
sequence A
description binding site for Di-nucleotide DZ B 20 and DA B 21
source : AC5

34) chain B
residue 22
type
sequence T
description binding site for Di-nucleotide DZ B 20 and DA B 21
source : AC5


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