eF-site ID 6hrb-ABCD
PDB Code 6hrb
Chain A, B, C, D

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Title Cryo-EM structure of the KdpFABC complex in an E2 inward-facing state (state 2)
Classification MEMBRANE PROTEIN
Compound Potassium-transporting ATPase potassium-binding subunit
Source (KDPF_ECOLI)
Sequence A:  MAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPGTT
GVERVLFRALGVSDREMNWKQYLCAILGLNMLGLAVLFFM
LLGQHYLPLNPQQLPGLSWDLALNTAVSFVTNTNWQSYSG
ETTLSYFSQMAGLTVQNFLSAASGIAVIFALIRAFTRQSM
STLGNAWVDLLRITLWVLVPVALLIALFFIQQGALQNFLP
YQAVNTVEGAQQLLPMGPVASQEAIKMLGTNGGGFFNANS
SHPFENPTALTNFVQMLAIFLIPTALCFAFGEVMGDRRQG
RMLLWAMSVIFVICVGVVMWAEVQGNPHLLALGTDSSINM
EGKESRFGVLVSSLFAVVTTAASCGAVIAMHDSFTALGGM
VPMWLMQIGEVVFGGVGSGLYGMMLFVLLAVFIAGLMIGR
TPEYLGKKIDVREMKLTALAILVTPTLVLMGAALAMMTDA
GRSAMLNPGPHGFSEVLYAVSSAANNNGSAFAGLSANSPF
WNCLLAFCMFVGRFGVIIPVMAIAGSLVSKKSQAASSGTL
PTHGPLFVGLLIGTVLLVGALTFIPALALGPVAEYLS
B:  FEPTLVVQALKEAVKKLNPQAQWRNPVMFIVWIGSLLTTC
ISIAMASGAMPGNALFSAAISGWLWITVLFANFAEALAEG
RSKAQANSLKGVKKTAFARKLREPKYGAAADKVPADQLRK
GDIVLVEAGDIIPCDGEVIEGGASVDESAITGEXAPVIRE
SGGDFASVTGGTRILSDWLVIECSVNPGETFLDRMIAMVE
GAQRRKTPNEIALTILLIALTIVFLLATATLWPFSAWGGN
AVSVTVLVALLVCLIPTTIGGLLSAIGVAGMSRMLGANVI
ATSGRAVEAAGDVDVLLLDKTGTITLGNRQASEFIPAQGV
DEKTLADAAQLASLADETPEGRSIVILAKQRFNLRERDVQ
SLHATFVPFTAQSRMSGINIDNRMIRKGSVDAIRRHVEAN
GGHFPTDVDQKVDQVARQGATPLVVVEGSRVLGVIALKDI
VKGGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVD
DFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQ
ADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVHIGKQM
LMTRGSLTTFSIANDVAKYFAIIPAAFAATYPQLNALNIM
CLHSPDSAILSAVIFNALIIVFLIPLALKGVSYKPLTASA
MLRRNLWIYGLGGLLVPFIGIKVIDLLLTVCGLV
C:  SGLRPALSTFIFLLLITGGVYPLLTTVLGQWWFPWQANGS
LIREGDTVRGSALIGQNFTGNGYFHGRPSATAEMPYNPQA
SGGSNLAVSNPELDKLIAARVAALRAANPDASASVPVELV
TASASGLDNNITPQAAAWQIPRVAKARNLSVEQLTQLIAK
YSQQPLVKYIGQPVVNIVELNLALDKLDE
D:  MSAGVITGVLLVFLLLGYLVYALINAE
Description (1)  Potassium-transporting ATPase potassium-binding subunit, Potassium-transporting ATPase ATP-binding subunit (E.C.3.6.3.12), Potassium-transporting ATPase KdpC subunit, Potassium-transporting ATPase KdpF subunit


Functional site

1) chain A
residue 378
type
sequence S
description binding site for residue K A 601
source : AC1

2) chain D
residue 1-2
type TOPO_DOM
sequence MS
description Periplasmic => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378
source Swiss-Prot : SWS_FT_FI1

3) chain B
residue 81-222
type TOPO_DOM
sequence FAEALAEGRSKAQANSLKGVKKTAFARKLREPKYGAAADK
VPADQLRKGDIVLVEAGDIIPCDGEVIEGGASVDESAITG
EXAPVIRESGGDFASVTGGTRILSDWLVIECSVNPGETFL
DRMIAMVEGAQRRKTPNEIALT
description Periplasmic => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378
source Swiss-Prot : SWS_FT_FI1

4) chain B
residue 264-574
type TOPO_DOM
sequence PTTIGGLLSAIGVAGMSRMLGANVIATSGRAVEAAGDVDV
LLLDKTGTITLGNRQASEFIPAQGVDEKTLADAAQLASLA
DETPEGRSIVILAKQRFNLRERDVQSLHATFVPFTAQSRM
SGINIDNRMIRKGSVDAIRRHVEANGGHFPTDVDQKVDQV
ARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKM
GIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALI
RQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAAK
EAGNMVDLDSNPTKLIEVVHIGKQMLMTRGS
description Periplasmic => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378
source Swiss-Prot : SWS_FT_FI1

5) chain B
residue 632-653
type TOPO_DOM
sequence IPLALKGVSYKPLTASAMLRRN
description Periplasmic => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378
source Swiss-Prot : SWS_FT_FI1

6) chain A
residue 436-479
type TOPO_DOM
sequence MMTDAGRSAMLNPGPHGFSEVLYAVSSAANNNGSAFAGLS
ANSP
description Periplasmic => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378
source Swiss-Prot : SWS_FT_FI1

7) chain A
residue 553-557
type TOPO_DOM
sequence AEYLS
description Periplasmic => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378
source Swiss-Prot : SWS_FT_FI1

8) chain D
residue 3-24
type TRANSMEM
sequence AGVITGVLLVFLLLGYLVYALI
description Helical => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378, ECO:0007744|PDB:5MRW, ECO:0007744|PDB:6HRA
source Swiss-Prot : SWS_FT_FI2

9) chain A
residue 525-552
type TRANSMEM
sequence PLFVGLLIGTVLLVGALTFIPALALGPV
description Helical => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378, ECO:0007744|PDB:5MRW, ECO:0007744|PDB:6HRA
source Swiss-Prot : SWS_FT_FI2

10) chain B
residue 62-80
type TRANSMEM
sequence ALFSAAISGWLWITVLFAN
description Helical => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378, ECO:0007744|PDB:5MRW, ECO:0007744|PDB:6HRA
source Swiss-Prot : SWS_FT_FI2

11) chain B
residue 223-242
type TRANSMEM
sequence ILLIALTIVFLLATATLWPF
description Helical => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378, ECO:0007744|PDB:5MRW, ECO:0007744|PDB:6HRA
source Swiss-Prot : SWS_FT_FI2

12) chain B
residue 252-263
type TRANSMEM
sequence VTVLVALLVCLI
description Helical => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378, ECO:0007744|PDB:5MRW, ECO:0007744|PDB:6HRA
source Swiss-Prot : SWS_FT_FI2

13) chain B
residue 575-595
type TRANSMEM
sequence LTTFSIANDVAKYFAIIPAAF
description Helical => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378, ECO:0007744|PDB:5MRW, ECO:0007744|PDB:6HRA
source Swiss-Prot : SWS_FT_FI2

14) chain B
residue 613-631
type TRANSMEM
sequence PDSAILSAVIFNALIIVFL
description Helical => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378, ECO:0007744|PDB:5MRW, ECO:0007744|PDB:6HRA
source Swiss-Prot : SWS_FT_FI2

15) chain B
residue 654-678
type TRANSMEM
sequence LWIYGLGGLLVPFIGIKVIDLLLTV
description Helical => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378, ECO:0007744|PDB:5MRW, ECO:0007744|PDB:6HRA
source Swiss-Prot : SWS_FT_FI2

16) chain A
residue 415-435
type TRANSMEM
sequence KLTALAILVTPTLVLMGAALA
description Helical => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378, ECO:0007744|PDB:5MRW, ECO:0007744|PDB:6HRA
source Swiss-Prot : SWS_FT_FI2

17) chain A
residue 480-501
type TRANSMEM
sequence FWNCLLAFCMFVGRFGVIIPVM
description Helical => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378, ECO:0007744|PDB:5MRW, ECO:0007744|PDB:6HRA
source Swiss-Prot : SWS_FT_FI2

18) chain B
residue 243-251
type TOPO_DOM
sequence SAWGGNAVS
description Cytoplasmic => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378
source Swiss-Prot : SWS_FT_FI3

19) chain B
residue 596-612
type TOPO_DOM
sequence AATYPQLNALNIMCLHS
description Cytoplasmic => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378
source Swiss-Prot : SWS_FT_FI3

20) chain B
residue 679-682
type TOPO_DOM
sequence CGLV
description Cytoplasmic => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378
source Swiss-Prot : SWS_FT_FI3

21) chain A
residue 502-524
type TOPO_DOM
sequence AIAGSLVSKKSQAASSGTLPTHG
description Cytoplasmic => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378
source Swiss-Prot : SWS_FT_FI3

22) chain B
residue 307
type ACT_SITE
sequence D
description 4-aspartylphosphate intermediate => ECO:0000255|HAMAP-Rule:MF_00285, ECO:0000269|PubMed:1474895
source Swiss-Prot : SWS_FT_FI4

23) chain B
residue 344
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_00285, ECO:0000269|PubMed:16354672, ECO:0007744|PDB:2A00, ECO:0007744|PDB:2A29
source Swiss-Prot : SWS_FT_FI5

24) chain B
residue 377
type BINDING
sequence F
description BINDING => ECO:0000255|HAMAP-Rule:MF_00285, ECO:0000269|PubMed:16354672, ECO:0007744|PDB:2A00, ECO:0007744|PDB:2A29
source Swiss-Prot : SWS_FT_FI5

25) chain B
residue 395
type BINDING
sequence K
description BINDING => ECO:0000255|HAMAP-Rule:MF_00285, ECO:0000269|PubMed:16354672, ECO:0007744|PDB:2A00, ECO:0007744|PDB:2A29
source Swiss-Prot : SWS_FT_FI5

26) chain B
residue 348
type BINDING
sequence E
description BINDING => ECO:0000255|HAMAP-Rule:MF_00285, ECO:0000269|PubMed:16354672, ECO:0007744|PDB:2A00
source Swiss-Prot : SWS_FT_FI6

27) chain B
residue 307-313
type prosite
sequence DKTGTIT
description ATPASE_E1_E2 E1-E2 ATPases phosphorylation site. DKTGTIT
source prosite : PS00154

28) chain B
residue 518
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_00285
source Swiss-Prot : SWS_FT_FI7

29) chain B
residue 522
type BINDING
sequence D
description BINDING => ECO:0000255|HAMAP-Rule:MF_00285
source Swiss-Prot : SWS_FT_FI7

30) chain B
residue 162
type MOD_RES
sequence X
description Phosphoserine => ECO:0000269|PubMed:28636601, ECO:0000269|PubMed:30478378
source Swiss-Prot : SWS_FT_FI8


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