eF-site ID 6hmo_16-AB
PDB Code 6hmo
Model 16
Chain A, B

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Title Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 in complex with the SMN-C5 splicing modifier
Classification RNA
Compound RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3')
Source (6HMO)
Sequence A:  AUACXXACCUG
B:  GGAGUAAGUCU
Description (1)  RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3')


Functional site

1) chain A
residue 8
type
sequence C
description binding site for residue GDZ A 101
source : AC1

2) chain A
residue 9
type
sequence C
description binding site for residue GDZ A 101
source : AC1

3) chain B
residue 14
type
sequence A
description binding site for residue GDZ A 101
source : AC1

4) chain B
residue 15
type
sequence G
description binding site for residue GDZ A 101
source : AC1

5) chain A
residue 4
type
sequence C
description binding site for residues PSU A 5 and PSU A 6
source : AC2

6) chain A
residue 7
type
sequence A
description binding site for residues PSU A 5 and PSU A 6
source : AC2

7) chain B
residue 17
type
sequence A
description binding site for residues PSU A 5 and PSU A 6
source : AC2

8) chain B
residue 18
type
sequence A
description binding site for residues PSU A 5 and PSU A 6
source : AC2

9) chain B
residue 19
type
sequence G
description binding site for residues PSU A 5 and PSU A 6
source : AC2


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