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eF-site ID
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6hd7-134AB |
PDB Code
|
6hd7 |
Chain
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1, 3, 4, A, B |
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|
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Title
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Cryo-EM structure of the ribosome-NatA complex |
Classification
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TRANSLATION |
Compound
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Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA |
Source
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ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; |
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Sequence
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1: |
UUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGC
AUAUCAAUAAGCGGAGGAAAAGAAACCAACCGGGAUUGCC
UUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUGAA
AUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGG
CAACUUUGGGGCCGUUCCUUGUCUAUGUUCCUUGGAACAG
GACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGUGC
GGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGG
GAAUGCAGCUCUAAGUGGGUGGUAAAUUCCAUCUAAAGCU
AAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUGAU
GGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUA
CGUGAAAUUGUUGAAAGGGAAGGGCAUUUGAUCAGACAUG
GUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUCUC
GCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAA
AUCCAUAGGAAUGUAGCUUGCCUCGGUAAGUAUUAUAGCC
UGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACGUA
AGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCU
UGAAACACGGACCAAGGAGUCUAACGUCUAUGCGAGUGUU
UGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUAGG
UUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAU
GUCUUCGGAUGGAUUUGAGUAAGAGCAUAGCUGUUGGGAC
CCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCCAG
AGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCA
AAUCGAUCGUCGAAUUUGGGUAUAGGGGCGAAAGACUAAU
CGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCUCA
GGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGA
AUGAUUAGAGGUUCCGGGGUCGAAAUGACCUUGACCUAUU
CUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAAUU
GAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUU
UUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCGAACGU
AGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCACA
AAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUG
GAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCGG
CCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGCGU
GUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUG
ACGAGUAGGCAGGCGUGGAGGUCAGUGACGAAGCCUAGAC
CGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUGGU
GGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAA
GUGGGGAAAGGUUCCACGUCAACAGCAGUUGGACGUGGGU
UAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAGGC
CUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUA
AGAUUCCGGAACCUGGAUAUGGAUUCUUCACGGUAACGUA
ACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAGUU
AUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUU
AUCCGGAGAUGGGGUCUUAUGGCUGGAAGAGGCCAGCACC
UUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAAUC
CACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAA
CCGCAGCAGGUCUCCAAGGUGAACAGCCUCUAGUUGAUAG
AAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGUAA
CUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGG
GCCUUGGUCAGACGCAGCGGGCGUGCUUGUGGACUGCUUG
GUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCUUG
UUGUAGACGGCCUUGGUCUUGCUACAAUUAACGAUCAACU
UAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUA
AAACAUAGCAUUGCGAUGGUCAGAAAGUGAUGUUGACGCA
AUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGA
AAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGA
CUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUG
ACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUAU
CUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGG
CAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUC
UAGUUUGACAUUGUGAAGAGACAUAGAGGGCUACCUUUAU
AGUUUCUUUACUUAUUCAAUGAAGCGGAGCUGGAAUUCAU
UUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGAU
CCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGG
CGGCACAUCUGUUAAACGAUAACGCAGAUGUCCUAAGGGG
GGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGGU
AAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAAC
CAUGAAAGUGUGGCCUAUCGAUCCUUUAGUCCCUCGGAAU
UUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAAC
UGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUU
UGAUUCUUCGAUGUCGGCUCUUCCUAUCAUACCGAAGCAG
AAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGAA
CGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUU
ACCCUACUGAUGAAUGUUACCGCAAUAGUAAUUGAACUUA
GUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGCG
GCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUG
GAUUAUGGCUGAACGCCUCUAAGUCAGAAUCCAUGCUAGA
ACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUAC
GAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGC
UAGCAACGGUGCACUUGGCGGAAAGGCCUUGGGUGCUUGC
UGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAUU
UGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGU
AGAGUAGCCUUGUUGUUACGAUCUGCUGAGAUUAAGCCUU
UGUUGUCUGAUUUGU
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3: |
GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCC
GAUCAACUGUAGUUAAGCUGGUAAGAGCCUGACCGAGUAG
UGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUC
U
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4: |
AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGA
AGAACGCAGCGAAAUGCGAUACGUAAUGUGAAUUGCAGAA
UUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCC
UUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
|
A: |
GGGUCGUUAGCUCAGUUGGUAGAGCAGUUGACUUUUAAUC
AAUUGGUCGCAGGUUCGAAUCCUGCACGACCCACCA
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B: |
GGAGCGGUAGUUCAGUCGGUUAGAAUACCUGCCUGUCACG
CAGGGGGUCGCGGGUUCGAGUCCCGUCCGUUCCGCCA
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Description
|
(1) |
60S ribosomal protein L42-A, 60S ribosomal protein L43-A, 60S ribosomal protein L2-A, 60S ribosomal protein L3, 60S ribosomal protein L4-A, 60S ribosomal protein L5, 60S ribosomal protein L6-A, 60S ribosomal protein L7-A, 60S ribosomal protein L8-A, 60S ribosomal protein L9-A, 60S ribosomal protein L11-A, 60S ribosomal protein L13-A, 60S ribosomal protein L14-A, 60S ribosomal protein L15-A, 60S ribosomal protein L16-A, 60S ribosomal protein L17-A, 60S ribosomal protein L18-A, 60S ribosomal protein L19-A, 60S ribosomal protein L20-A, 60S ribosomal protein L21-A, 60S ribosomal protein L22-A, 60S ribosomal protein L23-A, 60S ribosomal protein L24-A, 60S ribosomal protein L25, 60S ribosomal protein L26-A, 60S ribosomal protein L27-A, 60S ribosomal protein L28, 60S ribosomal protein L29, 60S ribosomal protein L30, 60S ribosomal protein L31-A, 60S ribosomal protein L32, 60S ribosomal protein L33-A, 60S ribosomal protein L34-A, 60S ribosomal protein L35-A, 60S ribosomal protein L36-A, 60S ribosomal protein L37-A, 60S ribosomal protein L38, 60S ribosomal protein L39, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L41-A, ribosomal protein RPL1, 60S ribosomal protein L10, N-terminal acetyltransferase A complex subunit NAT1, N-terminal acetyltransferase A complex catalytic subunit ARD1, N-alpha-acetyltransferase NAT5, nascent polypeptide chain/RNA Complex
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Functional site
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1)
|
chain |
1 |
residue |
92 |
type |
|
sequence |
G
|
description |
binding site for residue 3HE 1 3401
|
source |
: AC1
|
|
2)
|
chain |
1 |
residue |
93 |
type |
|
sequence |
C
|
description |
binding site for residue 3HE 1 3401
|
source |
: AC1
|
|
3)
|
chain |
1 |
residue |
2763 |
type |
|
sequence |
U
|
description |
binding site for residue 3HE 1 3401
|
source |
: AC1
|
|
4)
|
chain |
1 |
residue |
2764 |
type |
|
sequence |
C
|
description |
binding site for residue 3HE 1 3401
|
source |
: AC1
|
|
5)
|
chain |
1 |
residue |
2765 |
type |
|
sequence |
C
|
description |
binding site for residue 3HE 1 3401
|
source |
: AC1
|
|
6)
|
chain |
1 |
residue |
2793 |
type |
|
sequence |
G
|
description |
binding site for residue 3HE 1 3401
|
source |
: AC1
|
|
7)
|
chain |
1 |
residue |
2794 |
type |
|
sequence |
G
|
description |
binding site for residue 3HE 1 3401
|
source |
: AC1
|
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