eF-site ID 6h8n-A
PDB Code 6h8n
Chain A

click to enlarge
Title Structure of peptidoglycan deacetylase PdaC from Bacillus subtilis - mutant D285S
Classification HYDROLASE
Compound Peptidoglycan-N-acetylmuramic acid deacetylase PdaC
Source (PDAC_BACSU)
Sequence A:  VDPNQKVIALTFSDGPNPATTNQILDSLKKYKGHATFFVL
GSRVQYYPETLIRMLKEGNEVGNHSWSHPLLTRLSVKEAL
KQINDTQDIIEKISGYRPTLVRPPYGGINDELRSQMKMDV
ALWDVDPEDWKDRNKKTIVDRVMNQAGDGRTILIHDIYRT
SADAADEIIKKLTDQGYQLVTVSQLEEVKKQREAKELRRQ
WS
Description


Functional site

1) chain A
residue 261
type
sequence D
description binding site for residue ZN A 501
source : AC1

2) chain A
residue 311
type
sequence H
description binding site for residue ZN A 501
source : AC1

3) chain A
residue 315
type
sequence H
description binding site for residue ZN A 501
source : AC1

4) chain A
residue 261
type
sequence D
description binding site for residue PO4 A 502
source : AC2

5) chain A
residue 311
type
sequence H
description binding site for residue PO4 A 502
source : AC2

6) chain A
residue 315
type
sequence H
description binding site for residue PO4 A 502
source : AC2

7) chain A
residue 351
type
sequence P
description binding site for residue PO4 A 502
source : AC2

8) chain A
residue 352
type
sequence Y
description binding site for residue PO4 A 502
source : AC2

9) chain A
residue 400
type
sequence L
description binding site for residue PO4 A 502
source : AC2

10) chain A
residue 402
type
sequence H
description binding site for residue PO4 A 502
source : AC2

11) chain A
residue 322
type
sequence S
description binding site for residue PO4 A 503
source : AC3

12) chain A
residue 324
type
sequence K
description binding site for residue PO4 A 503
source : AC3

13) chain A
residue 325
type
sequence E
description binding site for residue PO4 A 503
source : AC3

14) chain A
residue 395
type
sequence D
description binding site for residue GOL A 504
source : AC4

15) chain A
residue 396
type
sequence G
description binding site for residue GOL A 504
source : AC4

16) chain A
residue 397
type
sequence R
description binding site for residue GOL A 504
source : AC4

17) chain A
residue 287
type
sequence L
description binding site for residue GOL B 501
source : AC5

18) chain A
residue 352
type
sequence Y
description binding site for residue GOL B 501
source : AC5

19) chain A
residue 443
type
sequence E
description binding site for residue PO4 B 503
source : AC7

20) chain A
residue 446
type
sequence R
description binding site for residue PO4 B 503
source : AC7

21) chain A
residue 260
type ACT_SITE
sequence S
description Proton acceptor => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

22) chain A
residue 402
type ACT_SITE
sequence H
description Proton donor => ECO:0000250
source Swiss-Prot : SWS_FT_FI2

23) chain A
residue 261
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

24) chain A
residue 311
type BINDING
sequence H
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

25) chain A
residue 315
type BINDING
sequence H
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

26) chain A
residue 376
type SITE
sequence D
description Raises pKa of active site His => ECO:0000250
source Swiss-Prot : SWS_FT_FI4


Display surface

Download
Links