eF-site ID 6h8n-B
PDB Code 6h8n
Chain B

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Title Structure of peptidoglycan deacetylase PdaC from Bacillus subtilis - mutant D285S
Classification HYDROLASE
Compound Peptidoglycan-N-acetylmuramic acid deacetylase PdaC
Source (PDAC_BACSU)
Sequence B:  VDPNQKVIALTFSDGPNPATTNQILDSLKKYKGHATFFVL
GSRVQYYPETLIRMLKEGNEVGNHSWSHPLLTRLSVKEAL
KQINDTQDIIEKISGYRPTLVRPPYGGINDELRSQMKMDV
ALWDVDPEDWKDRNKKTIVDRVMNQAGDGRTILIHDIYRT
SADAADEIIKKLTDQGYQLVTVSQLEEVKKQREAKELRRQ
WSHPQF
Description


Functional site

1) chain B
residue 443
type
sequence E
description binding site for residue PO4 A 502
source : AC2

2) chain B
residue 446
type
sequence R
description binding site for residue PO4 A 502
source : AC2

3) chain B
residue 379
type
sequence D
description binding site for residue PO4 A 503
source : AC3

4) chain B
residue 381
type
sequence N
description binding site for residue PO4 A 503
source : AC3

5) chain B
residue 384
type
sequence T
description binding site for residue PO4 A 503
source : AC3

6) chain B
residue 395
type
sequence D
description binding site for residue GOL A 504
source : AC4

7) chain B
residue 396
type
sequence G
description binding site for residue GOL A 504
source : AC4

8) chain B
residue 397
type
sequence R
description binding site for residue GOL A 504
source : AC4

9) chain B
residue 436
type
sequence K
description binding site for residue GOL A 504
source : AC4

10) chain B
residue 446
type
sequence R
description binding site for residue GOL B 501
source : AC5

11) chain B
residue 261
type
sequence D
description binding site for residue ZN B 502
source : AC6

12) chain B
residue 311
type
sequence H
description binding site for residue ZN B 502
source : AC6

13) chain B
residue 315
type
sequence H
description binding site for residue ZN B 502
source : AC6

14) chain B
residue 261
type
sequence D
description binding site for residue PO4 B 503
source : AC7

15) chain B
residue 311
type
sequence H
description binding site for residue PO4 B 503
source : AC7

16) chain B
residue 315
type
sequence H
description binding site for residue PO4 B 503
source : AC7

17) chain B
residue 351
type
sequence P
description binding site for residue PO4 B 503
source : AC7

18) chain B
residue 352
type
sequence Y
description binding site for residue PO4 B 503
source : AC7

19) chain B
residue 400
type
sequence L
description binding site for residue PO4 B 503
source : AC7

20) chain B
residue 402
type
sequence H
description binding site for residue PO4 B 503
source : AC7

21) chain B
residue 260
type ACT_SITE
sequence S
description Proton acceptor => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

22) chain B
residue 402
type ACT_SITE
sequence H
description Proton donor => ECO:0000250
source Swiss-Prot : SWS_FT_FI2

23) chain B
residue 261
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

24) chain B
residue 311
type BINDING
sequence H
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

25) chain B
residue 315
type BINDING
sequence H
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI3

26) chain B
residue 376
type SITE
sequence D
description Raises pKa of active site His => ECO:0000250
source Swiss-Prot : SWS_FT_FI4


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