eF-site ID 6h6m-ABCDEF PDB Code 6h6m Chain A, B, C, D, E, F click to enlarge Title CR10 murine norovirus protruding domain in complex with the CD300lf receptor and glycochenodeoxycholate (GCDCA) Classification VIRAL PROTEIN Compound Capsid protein Source (CLM1_MOUSE) Sequence A:  RMVDLPVLQPRLCTHARWPAPIYGLLVDPSLPSNPQWQNG RVHVDGTLLGTTPVSGSWVSCFAAEAAYEFQSGTGEVATF TLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQTETTKTG DKLKVTTFEMILGPTTNVDQAPYQGRVYASLTAVASLDLV DGRVRAVPRSIYGFQDVIPEYNDGLLVPLAPPIGPFLPGE VLLRFRTYMRQLDTADAAAEAIDCALPQEFISWFASNAFT VQSDALLLRYRNTLTGQLLFECKLYSEGYIALSYSGSGPL TFPTDGFFEVVSWVPRLFQLASV B:  RMVDLPVLQPRLCTHARWPAPIYGLLVDPSLPSNPQWQNG RVHVDGTLLGTTPVSGSWVSCFAAEAAYEFQSGTGEVATF TLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQTETTKTG DKLKVTTFEMILGPTTNVDQAPYQGRVYASLTAVASLDLV DGRVRAVPRSIYGFQDVIPEYNDGLLVPLAPPIGPFLPGE VLLRFRTYMRQLDTADAAAEAIDCALPQEFISWFASNAFT VQSDALLLRYRNTLTGQLLFECKLYSEGYIALSYSGSGPL TFPTDGFFEVVSWVPRLFQLASV C:  RMVDLPVLQPRLCTHARWPAPIYGLLVDPSLPSNPQWQNG RVHVDGTLLGTTPVSGSWVSCFAAEAAYEFQSGTGEVATF TLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQTETTKTG DKLKVTTFEMILGPTTNVDQAPYQGRVYASLTAVASLDLV DGRVRAVPRSIYGFQDVIPEYNDGLLVPLAPPIGPFLPGE VLLRFRTYMRQLDTADAAAEAIDCALPQEFISWFASNAFT VQSDALLLRYRNTLTGQLLFECKLYSEGYIALSYSGSGPL TFPTDGFFEVVSWVPRLFQLASV D:  RMVDLPVLQPRLCTHARWPAPIYGLLVDPSLPSNPQWQNG RVHVDGTLLGTTPVSGSWVSCFAAEAAYEFQSGTGEVATF TLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQTETTKTG DKLKVTTFEMILGPTTNVDQAPYQGRVYASLTAVASLDLV DGRVRAVPRSIYGFQDVIPEYNDGLLVPLAPPIGPFLPGE VLLRFRTYMRQLDTADAAAEAIDCALPQEFISWFASNAFT VQSDALLLRYRNTLTGQLLFECKLYSEGYIALSYSGSGPL TFPTDGFFEVVSWVPRLFQLASV E:  EDPVTGPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVP QRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDL RMSDAGIYWCGITKGGLDPMFKVTVNIGPVP F:  EDPVTGPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVP QRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDL RMSDAGIYWCGITKGGLDPMFKVTVNIGPVP Description Functional site 1) chain A residue 245 type sequence W description binding site for residue CHO A 601 source : AC1 2) chain A residue 247 type sequence A description binding site for residue CHO A 601 source : AC1 3) chain A residue 250 type sequence Y description binding site for residue CHO A 601 source : AC1 4) chain A residue 435 type sequence Y description binding site for residue CHO A 601 source : AC1 5) chain A residue 436 type sequence M description binding site for residue CHO A 601 source : AC1 6) chain A residue 437 type sequence R description binding site for residue CHO A 601 source : AC1 7) chain B residue 312 type sequence Q description binding site for residue CHO A 601 source : AC1 8) chain B residue 314 type sequence G description binding site for residue CHO A 601 source : AC1 9) chain B residue 390 type sequence R description binding site for residue CHO A 601 source : AC1 10) chain B residue 391 type sequence V description binding site for residue CHO A 601 source : AC1 11) chain B residue 392 type sequence R description binding site for residue CHO A 601 source : AC1 12) chain A residue 258 type sequence L description binding site for residue EDO A 602 source : AC2 13) chain A residue 403 type sequence D description binding site for residue EDO A 602 source : AC2 14) chain A residue 433 type sequence R description binding site for residue EDO A 602 source : AC2 15) chain A residue 448 type sequence A description binding site for residue EDO A 602 source : AC2 16) chain A residue 449 type sequence I description binding site for residue EDO A 602 source : AC2 17) chain A residue 450 type sequence D description binding site for residue EDO A 602 source : AC2 18) chain A residue 262 type sequence P description binding site for residue EDO A 603 source : AC3 19) chain A residue 263 type sequence Q description binding site for residue EDO A 603 source : AC3 20) chain A residue 264 type sequence W description binding site for residue EDO A 603 source : AC3 21) chain A residue 403 type sequence D description binding site for residue EDO A 603 source : AC3 22) chain A residue 405 type sequence I description binding site for residue EDO A 603 source : AC3 23) chain A residue 295 type sequence Y description binding site for residue EDO A 604 source : AC4 24) chain A residue 340 type sequence Q description binding site for residue EDO A 604 source : AC4 25) chain A residue 341 type sequence T description binding site for residue EDO A 604 source : AC4 26) chain A residue 342 type sequence E description binding site for residue EDO A 604 source : AC4 27) chain A residue 387 type sequence V description binding site for residue EDO A 604 source : AC4 28) chain A residue 390 type sequence R description binding site for residue EDO A 604 source : AC4 29) chain A residue 391 type sequence V description binding site for residue EDO A 604 source : AC4 30) chain A residue 280 type sequence P description binding site for residue EDO A 605 source : AC5 31) chain A residue 281 type sequence V description binding site for residue EDO A 605 source : AC5 32) chain A residue 282 type sequence S description binding site for residue EDO A 605 source : AC5 33) chain A residue 285 type sequence W description binding site for residue EDO A 605 source : AC5 34) chain A residue 326 type sequence L description binding site for residue EDO A 605 source : AC5 35) chain B residue 239 type sequence L description binding site for residue EDO A 605 source : AC5 36) chain A residue 364 type sequence N description binding site for residue NA A 606 source : AC6 37) chain A residue 366 type sequence D description binding site for residue NA A 606 source : AC6 38) chain E residue 94 type sequence K description binding site for residue NA A 606 source : AC6 39) chain E residue 96 type sequence G description binding site for residue NA A 606 source : AC6 40) chain E residue 98 type sequence D description binding site for residue NA A 606 source : AC6 41) chain A residue 312 type sequence Q description binding site for residue CHO B 600 source : AC7 42) chain A residue 314 type sequence G description binding site for residue CHO B 600 source : AC7 43) chain A residue 390 type sequence R description binding site for residue CHO B 600 source : AC7 44) chain A residue 391 type sequence V description binding site for residue CHO B 600 source : AC7 45) chain A residue 392 type sequence R description binding site for residue CHO B 600 source : AC7 46) chain B residue 245 type sequence W description binding site for residue CHO B 600 source : AC7 47) chain B residue 247 type sequence A description binding site for residue CHO B 600 source : AC7 48) chain B residue 435 type sequence Y description binding site for residue CHO B 600 source : AC7 49) chain B residue 436 type sequence M description binding site for residue CHO B 600 source : AC7 50) chain B residue 437 type sequence R description binding site for residue CHO B 600 source : AC7 51) chain B residue 438 type sequence Q description binding site for residue NA B 601 source : AC8 52) chain B residue 440 type sequence D description binding site for residue NA B 601 source : AC8 53) chain B residue 447 type sequence E description binding site for residue NA B 601 source : AC8 54) chain B residue 403 type sequence D description binding site for residue EDO B 602 source : AC9 55) chain B residue 448 type sequence A description binding site for residue EDO B 602 source : AC9 56) chain B residue 449 type sequence I description binding site for residue EDO B 602 source : AC9 57) chain B residue 450 type sequence D description binding site for residue EDO B 602 source : AC9 58) chain B residue 262 type sequence P description binding site for residue EDO B 603 source : AD1 59) chain B residue 263 type sequence Q description binding site for residue EDO B 603 source : AD1 60) chain B residue 264 type sequence W description binding site for residue EDO B 603 source : AD1 61) chain B residue 403 type sequence D description binding site for residue EDO B 603 source : AD1 62) chain B residue 295 type sequence Y description binding site for residue EDO B 604 source : AD2 63) chain B residue 340 type sequence Q description binding site for residue EDO B 604 source : AD2 64) chain B residue 341 type sequence T description binding site for residue EDO B 604 source : AD2 65) chain B residue 342 type sequence E description binding site for residue EDO B 604 source : AD2 66) chain B residue 387 type sequence V description binding site for residue EDO B 604 source : AD2 67) chain B residue 390 type sequence R description binding site for residue EDO B 604 source : AD2 68) chain B residue 391 type sequence V description binding site for residue EDO B 604 source : AD2 69) chain A residue 239 type sequence L description binding site for residue EDO B 605 source : AD3 70) chain B residue 280 type sequence P description binding site for residue EDO B 605 source : AD3 71) chain B residue 281 type sequence V description binding site for residue EDO B 605 source : AD3 72) chain B residue 282 type sequence S description binding site for residue EDO B 605 source : AD3 73) chain B residue 285 type sequence W description binding site for residue EDO B 605 source : AD3 74) chain B residue 326 type sequence L description binding site for residue EDO B 605 source : AD3 75) chain C residue 245 type sequence W description binding site for residue CHO C 601 source : AD4 76) chain C residue 247 type sequence A description binding site for residue CHO C 601 source : AD4 77) chain C residue 250 type sequence Y description binding site for residue CHO C 601 source : AD4 78) chain C residue 435 type sequence Y description binding site for residue CHO C 601 source : AD4 79) chain C residue 436 type sequence M description binding site for residue CHO C 601 source : AD4 80) chain C residue 437 type sequence R description binding site for residue CHO C 601 source : AD4 81) chain D residue 312 type sequence Q description binding site for residue CHO C 601 source : AD4 82) chain D residue 314 type sequence G description binding site for residue CHO C 601 source : AD4 83) chain D residue 340 type sequence Q description binding site for residue CHO C 601 source : AD4 84) chain D residue 390 type sequence R description binding site for residue CHO C 601 source : AD4 85) chain D residue 391 type sequence V description binding site for residue CHO C 601 source : AD4 86) chain D residue 392 type sequence R description binding site for residue CHO C 601 source : AD4 87) chain C residue 262 type sequence P description binding site for residue EDO C 602 source : AD5 88) chain C residue 263 type sequence Q description binding site for residue EDO C 602 source : AD5 89) chain C residue 264 type sequence W description binding site for residue EDO C 602 source : AD5 90) chain C residue 403 type sequence D description binding site for residue EDO C 602 source : AD5 91) chain C residue 403 type sequence D description binding site for residue EDO C 603 source : AD6 92) chain C residue 433 type sequence R description binding site for residue EDO C 603 source : AD6 93) chain C residue 448 type sequence A description binding site for residue EDO C 603 source : AD6 94) chain C residue 449 type sequence I description binding site for residue EDO C 603 source : AD6 95) chain C residue 450 type sequence D description binding site for residue EDO C 603 source : AD6 96) chain C residue 295 type sequence Y description binding site for residue EDO C 604 source : AD7 97) chain C residue 340 type sequence Q description binding site for residue EDO C 604 source : AD7 98) chain C residue 341 type sequence T description binding site for residue EDO C 604 source : AD7 99) chain C residue 342 type sequence E description binding site for residue EDO C 604 source : AD7 100) chain C residue 387 type sequence V description binding site for residue EDO C 604 source : AD7 101) chain C residue 389 type sequence G description binding site for residue EDO C 604 source : AD7 102) chain C residue 390 type sequence R description binding site for residue EDO C 604 source : AD7 103) chain C residue 391 type sequence V description binding site for residue EDO C 604 source : AD7 104) chain C residue 364 type sequence N description binding site for residue NA C 605 source : AD8 105) chain C residue 366 type sequence D description binding site for residue NA C 605 source : AD8 106) chain F residue 94 type sequence K description binding site for residue NA C 605 source : AD8 107) chain F residue 96 type sequence G description binding site for residue NA C 605 source : AD8 108) chain F residue 98 type sequence D description binding site for residue NA C 605 source : AD8 109) chain C residue 310 type sequence I description binding site for residue CHO D 600 source : AD9 110) chain C residue 312 type sequence Q description binding site for residue CHO D 600 source : AD9 111) chain C residue 314 type sequence G description binding site for residue CHO D 600 source : AD9 112) chain C residue 390 type sequence R description binding site for residue CHO D 600 source : AD9 113) chain C residue 391 type sequence V description binding site for residue CHO D 600 source : AD9 114) chain C residue 392 type sequence R description binding site for residue CHO D 600 source : AD9 115) chain D residue 245 type sequence W description binding site for residue CHO D 600 source : AD9 116) chain D residue 247 type sequence A description binding site for residue CHO D 600 source : AD9 117) chain D residue 250 type sequence Y description binding site for residue CHO D 600 source : AD9 118) chain D residue 435 type sequence Y description binding site for residue CHO D 600 source : AD9 119) chain D residue 437 type sequence R description binding site for residue CHO D 600 source : AD9 120) chain D residue 438 type sequence Q description binding site for residue NA D 601 source : AE1 121) chain D residue 440 type sequence D description binding site for residue NA D 601 source : AE1 122) chain D residue 447 type sequence E description binding site for residue NA D 601 source : AE1 123) chain D residue 262 type sequence P description binding site for residue EDO D 602 source : AE2 124) chain D residue 263 type sequence Q description binding site for residue EDO D 602 source : AE2 125) chain D residue 264 type sequence W description binding site for residue EDO D 602 source : AE2 126) chain D residue 403 type sequence D description binding site for residue EDO D 602 source : AE2 127) chain D residue 403 type sequence D description binding site for residue EDO D 603 source : AE3 128) chain D residue 448 type sequence A description binding site for residue EDO D 603 source : AE3 129) chain D residue 449 type sequence I description binding site for residue EDO D 603 source : AE3 130) chain D residue 450 type sequence D description binding site for residue EDO D 603 source : AE3 131) chain E residue 12 type sequence G description binding site for residue EDO E 201 source : AE4 132) chain E residue 13 type sequence Q description binding site for residue EDO E 201 source : AE4 133) chain E residue 16 type sequence G description binding site for residue EDO E 201 source : AE4 134) chain E residue 17 type sequence S description binding site for residue EDO E 201 source : AE4 135) chain E residue 80 type sequence L description binding site for residue EDO E 201 source : AE4 136) chain E residue 32 type sequence K description binding site for residue PEG E 202 source : AE5 137) chain E residue 49 type sequence E description binding site for residue PEG E 202 source : AE5 138) chain E residue 50 type sequence T description binding site for residue PEG E 202 source : AE5 139) chain F residue 12 type sequence G description binding site for residue EDO F 201 source : AE6 140) chain F residue 13 type sequence Q description binding site for residue EDO F 201 source : AE6 141) chain F residue 16 type sequence G description binding site for residue EDO F 201 source : AE6 142) chain F residue 17 type sequence S description binding site for residue EDO F 201 source : AE6 143) chain F residue 32 type sequence K description binding site for residue PGE F 202 source : AE7 144) chain F residue 49 type sequence E description binding site for residue PGE F 202 source : AE7 145) chain F residue 50 type sequence T description binding site for residue PGE F 202 source : AE7

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