eF-site ID 6h6l-D
PDB Code 6h6l
Chain D

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Title Murine norovirus protruding domain (CW3 strain) in complex with the CD300lf receptor and glycochenodeoxycholate (GCDCA)
Classification VIRAL PROTEIN
Compound Capsid protein
Source (CLM1_MOUSE)
Sequence D:  RMVDLPVIQPRLCTHARWPAPVYGLLVDPSLPSNPQWQNG
RVHVDGTLLGTTPISGSWVSCFAAEAAYKFQSGTGEVATF
TLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQTETTKTG
DKLKVTTFEMILGPTTNADQAPYQGRVFASVTAAASLDLV
DGRVRAVPRSIYGFQDTIPEYNDGLLVPLAPPIGPFLPGE
VLLRFRTYMRQIDTADAAAEAIDCALPQEFVSWFASNAFT
VQSEALLLRYRNTLTGQLLFECKLYNEGYIALSYSGSGPL
TFPTDGIFEVVSWVPRLYQLASV
Description


Functional site

1) chain D
residue 312
type
sequence Q
description binding site for residue CHO C 603
source : AD3

2) chain D
residue 314
type
sequence G
description binding site for residue CHO C 603
source : AD3

3) chain D
residue 390
type
sequence R
description binding site for residue CHO C 603
source : AD3

4) chain D
residue 391
type
sequence V
description binding site for residue CHO C 603
source : AD3

5) chain D
residue 392
type
sequence R
description binding site for residue CHO C 603
source : AD3

6) chain D
residue 245
type
sequence W
description binding site for residue CHO D 601
source : AD5

7) chain D
residue 247
type
sequence A
description binding site for residue CHO D 601
source : AD5

8) chain D
residue 250
type
sequence Y
description binding site for residue CHO D 601
source : AD5

9) chain D
residue 435
type
sequence Y
description binding site for residue CHO D 601
source : AD5

10) chain D
residue 436
type
sequence M
description binding site for residue CHO D 601
source : AD5

11) chain D
residue 437
type
sequence R
description binding site for residue CHO D 601
source : AD5

12) chain D
residue 366
type
sequence D
description binding site for residue MG D 602
source : AD6

13) chain D
residue 410
type
sequence D
description binding site for residue MG D 602
source : AD6

14) chain D
residue 438
type
sequence Q
description binding site for residue MG D 603
source : AD7

15) chain D
residue 440
type
sequence D
description binding site for residue MG D 603
source : AD7

16) chain D
residue 447
type
sequence E
description binding site for residue MG D 603
source : AD7

17) chain D
residue 364
type
sequence N
description binding site for residue NA D 604
source : AD8

18) chain D
residue 366
type
sequence D
description binding site for residue NA D 604
source : AD8


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