eF-site ID 6h6l-B
PDB Code 6h6l
Chain B

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Title Murine norovirus protruding domain (CW3 strain) in complex with the CD300lf receptor and glycochenodeoxycholate (GCDCA)
Classification VIRAL PROTEIN
Compound Capsid protein
Source (CLM1_MOUSE)
Sequence B:  RMVDLPVIQPRLCTHARWPAPVYGLLVDPSLPSNPQWQNG
RVHVDGTLLGTTPISGSWVSCFAAEAAYKFQSGTGEVATF
TLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQTETTKTG
DKLKVTTFEMILGPTTNADQAPYQGRVFASVTAAASLDLV
DGRVRAVPRSIYGFQDTIPEYNDGLLVPLAPPIGPFLPGE
VLLRFRTYMRQIDTADAAAEAIDCALPQEFVSWFASNAFT
VQSEALLLRYRNTLTGQLLFECKLYNEGYIALSYSGSGPL
TFPTDGIFEVVSWVPRLYQLASV
Description


Functional site

1) chain B
residue 310
type
sequence I
description binding site for residue CHO A 603
source : AC3

2) chain B
residue 312
type
sequence Q
description binding site for residue CHO A 603
source : AC3

3) chain B
residue 314
type
sequence G
description binding site for residue CHO A 603
source : AC3

4) chain B
residue 391
type
sequence V
description binding site for residue CHO A 603
source : AC3

5) chain B
residue 392
type
sequence R
description binding site for residue CHO A 603
source : AC3

6) chain B
residue 245
type
sequence W
description binding site for residue CHO B 601
source : AC5

7) chain B
residue 247
type
sequence A
description binding site for residue CHO B 601
source : AC5

8) chain B
residue 250
type
sequence Y
description binding site for residue CHO B 601
source : AC5

9) chain B
residue 435
type
sequence Y
description binding site for residue CHO B 601
source : AC5

10) chain B
residue 436
type
sequence M
description binding site for residue CHO B 601
source : AC5

11) chain B
residue 437
type
sequence R
description binding site for residue CHO B 601
source : AC5

12) chain B
residue 366
type
sequence D
description binding site for residue MG B 602
source : AC6

13) chain B
residue 410
type
sequence D
description binding site for residue MG B 602
source : AC6

14) chain B
residue 438
type
sequence Q
description binding site for residue MG B 603
source : AC7

15) chain B
residue 440
type
sequence D
description binding site for residue MG B 603
source : AC7

16) chain B
residue 447
type
sequence E
description binding site for residue MG B 603
source : AC7

17) chain B
residue 334
type
sequence Q
description binding site for residue EDO B 604
source : AC8

18) chain B
residue 356
type
sequence E
description binding site for residue EDO B 604
source : AC8

19) chain B
residue 377
type
sequence S
description binding site for residue EDO B 604
source : AC8

20) chain B
residue 364
type
sequence N
description binding site for residue NA B 605
source : AC9

21) chain B
residue 366
type
sequence D
description binding site for residue NA B 605
source : AC9


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