eF-site ID 6h6l-ABCDEFGH PDB Code 6h6l Chain A, B, C, D, E, F, G, H click to enlarge Title Murine norovirus protruding domain (CW3 strain) in complex with the CD300lf receptor and glycochenodeoxycholate (GCDCA) Classification VIRAL PROTEIN Compound Capsid protein Source (CLM1_MOUSE) Sequence A:  RMVDLPVIQPRLCTHARWPAPVYGLLVDPSLPSNPQWQNG RVHVDGTLLGTTPISGSWVSCFAAEAAYKFQSGTGEVATF TLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQTETTKTG DKLKVTTFEMILGPTTNADQAPYQGRVFASVTAAASLDLV DGRVRAVPRSIYGFQDTIPEYNDGLLVPLAPPIGPFLPGE VLLRFRTYMRQIDTADAAAEAIDCALPQEFVSWFASNAFT VQSEALLLRYRNTLTGQLLFECKLYNEGYIALSYSPLTFP TDGIFEVVSWVPRLYQLASV B:  RMVDLPVIQPRLCTHARWPAPVYGLLVDPSLPSNPQWQNG RVHVDGTLLGTTPISGSWVSCFAAEAAYKFQSGTGEVATF TLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQTETTKTG DKLKVTTFEMILGPTTNADQAPYQGRVFASVTAAASLDLV DGRVRAVPRSIYGFQDTIPEYNDGLLVPLAPPIGPFLPGE VLLRFRTYMRQIDTADAAAEAIDCALPQEFVSWFASNAFT VQSEALLLRYRNTLTGQLLFECKLYNEGYIALSYSGSGPL TFPTDGIFEVVSWVPRLYQLASV C:  RMVDLPVIQPRLCTHARWPAPVYGLLVDPSLPSNPQWQNG RVHVDGTLLGTTPISGSWVSCFAAEAAYKFQSGTGEVATF TLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQTETTKTG DKLKVTTFEMILGPTTNADQAPYQGRVFASVTAAASLDLV DGRVRAVPRSIYGFQDTIPEYNDGLLVPLAPPIGPFLPGE VLLRFRTYMRQIDTADAAAEAIDCALPQEFVSWFASNAFT VQSEALLLRYRNTLTGQLLFECKLYNEGYIALSYGPLTFP TDGIFEVVSWVPRLYQLASV D:  RMVDLPVIQPRLCTHARWPAPVYGLLVDPSLPSNPQWQNG RVHVDGTLLGTTPISGSWVSCFAAEAAYKFQSGTGEVATF TLIEQDGSAYVPGDRAAPLGYPDFSGQLEIEVQTETTKTG DKLKVTTFEMILGPTTNADQAPYQGRVFASVTAAASLDLV DGRVRAVPRSIYGFQDTIPEYNDGLLVPLAPPIGPFLPGE VLLRFRTYMRQIDTADAAAEAIDCALPQEFVSWFASNAFT VQSEALLLRYRNTLTGQLLFECKLYNEGYIALSYSGSGPL TFPTDGIFEVVSWVPRLYQLASV E:  DPVTGPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQ RSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLR MSDAGIYWCGITKGGLDPMFKVTVNIGPV F:  DPVTGPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQ RSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLR MSDAGIYWCGITKGGLDPMFKVTVNIGPVPT G:  DPVTGPEEVSLTVQCRYTYKKYWCQGVPQRSCKTLVETDA SEQLVKKNRVSIRDFTVTMEDLRMSDAGIYWCGITKGGLD PMFKVTVN H:  DPVTGPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQ RSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLR MSDAGIYWCGITKGGLDPMFKVTVNIGPVP Description Functional site 1) chain A residue 366 type sequence D description binding site for residue MG A 601 source : AC1 2) chain A residue 410 type sequence D description binding site for residue MG A 601 source : AC1 3) chain A residue 438 type sequence Q description binding site for residue MG A 602 source : AC2 4) chain A residue 440 type sequence D description binding site for residue MG A 602 source : AC2 5) chain A residue 447 type sequence E description binding site for residue MG A 602 source : AC2 6) chain A residue 245 type sequence W description binding site for residue CHO A 603 source : AC3 7) chain A residue 247 type sequence A description binding site for residue CHO A 603 source : AC3 8) chain A residue 250 type sequence Y description binding site for residue CHO A 603 source : AC3 9) chain A residue 435 type sequence Y description binding site for residue CHO A 603 source : AC3 10) chain A residue 436 type sequence M description binding site for residue CHO A 603 source : AC3 11) chain A residue 437 type sequence R description binding site for residue CHO A 603 source : AC3 12) chain B residue 310 type sequence I description binding site for residue CHO A 603 source : AC3 13) chain B residue 312 type sequence Q description binding site for residue CHO A 603 source : AC3 14) chain B residue 314 type sequence G description binding site for residue CHO A 603 source : AC3 15) chain B residue 391 type sequence V description binding site for residue CHO A 603 source : AC3 16) chain B residue 392 type sequence R description binding site for residue CHO A 603 source : AC3 17) chain A residue 364 type sequence N description binding site for residue NA A 604 source : AC4 18) chain A residue 366 type sequence D description binding site for residue NA A 604 source : AC4 19) chain E residue 94 type sequence K description binding site for residue NA A 604 source : AC4 20) chain E residue 96 type sequence G description binding site for residue NA A 604 source : AC4 21) chain E residue 98 type sequence D description binding site for residue NA A 604 source : AC4 22) chain A residue 312 type sequence Q description binding site for residue CHO B 601 source : AC5 23) chain A residue 314 type sequence G description binding site for residue CHO B 601 source : AC5 24) chain A residue 391 type sequence V description binding site for residue CHO B 601 source : AC5 25) chain A residue 392 type sequence R description binding site for residue CHO B 601 source : AC5 26) chain B residue 245 type sequence W description binding site for residue CHO B 601 source : AC5 27) chain B residue 247 type sequence A description binding site for residue CHO B 601 source : AC5 28) chain B residue 250 type sequence Y description binding site for residue CHO B 601 source : AC5 29) chain B residue 435 type sequence Y description binding site for residue CHO B 601 source : AC5 30) chain B residue 436 type sequence M description binding site for residue CHO B 601 source : AC5 31) chain B residue 437 type sequence R description binding site for residue CHO B 601 source : AC5 32) chain B residue 366 type sequence D description binding site for residue MG B 602 source : AC6 33) chain B residue 410 type sequence D description binding site for residue MG B 602 source : AC6 34) chain B residue 438 type sequence Q description binding site for residue MG B 603 source : AC7 35) chain B residue 440 type sequence D description binding site for residue MG B 603 source : AC7 36) chain B residue 447 type sequence E description binding site for residue MG B 603 source : AC7 37) chain B residue 334 type sequence Q description binding site for residue EDO B 604 source : AC8 38) chain B residue 356 type sequence E description binding site for residue EDO B 604 source : AC8 39) chain B residue 377 type sequence S description binding site for residue EDO B 604 source : AC8 40) chain F residue 42 type sequence R description binding site for residue EDO B 604 source : AC8 41) chain B residue 364 type sequence N description binding site for residue NA B 605 source : AC9 42) chain B residue 366 type sequence D description binding site for residue NA B 605 source : AC9 43) chain F residue 94 type sequence K description binding site for residue NA B 605 source : AC9 44) chain F residue 96 type sequence G description binding site for residue NA B 605 source : AC9 45) chain F residue 98 type sequence D description binding site for residue NA B 605 source : AC9 46) chain C residue 366 type sequence D description binding site for residue MG C 601 source : AD1 47) chain C residue 410 type sequence D description binding site for residue MG C 601 source : AD1 48) chain C residue 438 type sequence Q description binding site for residue MG C 602 source : AD2 49) chain C residue 440 type sequence D description binding site for residue MG C 602 source : AD2 50) chain C residue 447 type sequence E description binding site for residue MG C 602 source : AD2 51) chain C residue 245 type sequence W description binding site for residue CHO C 603 source : AD3 52) chain C residue 247 type sequence A description binding site for residue CHO C 603 source : AD3 53) chain C residue 250 type sequence Y description binding site for residue CHO C 603 source : AD3 54) chain C residue 435 type sequence Y description binding site for residue CHO C 603 source : AD3 55) chain C residue 436 type sequence M description binding site for residue CHO C 603 source : AD3 56) chain C residue 437 type sequence R description binding site for residue CHO C 603 source : AD3 57) chain D residue 312 type sequence Q description binding site for residue CHO C 603 source : AD3 58) chain D residue 314 type sequence G description binding site for residue CHO C 603 source : AD3 59) chain D residue 390 type sequence R description binding site for residue CHO C 603 source : AD3 60) chain D residue 391 type sequence V description binding site for residue CHO C 603 source : AD3 61) chain D residue 392 type sequence R description binding site for residue CHO C 603 source : AD3 62) chain C residue 364 type sequence N description binding site for residue NA C 604 source : AD4 63) chain C residue 366 type sequence D description binding site for residue NA C 604 source : AD4 64) chain G residue 94 type sequence K description binding site for residue NA C 604 source : AD4 65) chain G residue 96 type sequence G description binding site for residue NA C 604 source : AD4 66) chain G residue 98 type sequence D description binding site for residue NA C 604 source : AD4 67) chain C residue 310 type sequence I description binding site for residue CHO D 601 source : AD5 68) chain C residue 312 type sequence Q description binding site for residue CHO D 601 source : AD5 69) chain C residue 314 type sequence G description binding site for residue CHO D 601 source : AD5 70) chain C residue 390 type sequence R description binding site for residue CHO D 601 source : AD5 71) chain C residue 391 type sequence V description binding site for residue CHO D 601 source : AD5 72) chain C residue 392 type sequence R description binding site for residue CHO D 601 source : AD5 73) chain D residue 245 type sequence W description binding site for residue CHO D 601 source : AD5 74) chain D residue 247 type sequence A description binding site for residue CHO D 601 source : AD5 75) chain D residue 250 type sequence Y description binding site for residue CHO D 601 source : AD5 76) chain D residue 435 type sequence Y description binding site for residue CHO D 601 source : AD5 77) chain D residue 436 type sequence M description binding site for residue CHO D 601 source : AD5 78) chain D residue 437 type sequence R description binding site for residue CHO D 601 source : AD5 79) chain D residue 366 type sequence D description binding site for residue MG D 602 source : AD6 80) chain D residue 410 type sequence D description binding site for residue MG D 602 source : AD6 81) chain D residue 438 type sequence Q description binding site for residue MG D 603 source : AD7 82) chain D residue 440 type sequence D description binding site for residue MG D 603 source : AD7 83) chain D residue 447 type sequence E description binding site for residue MG D 603 source : AD7 84) chain D residue 364 type sequence N description binding site for residue NA D 604 source : AD8 85) chain D residue 366 type sequence D description binding site for residue NA D 604 source : AD8 86) chain H residue 94 type sequence K description binding site for residue NA D 604 source : AD8 87) chain H residue 96 type sequence G description binding site for residue NA D 604 source : AD8 88) chain H residue 98 type sequence D description binding site for residue NA D 604 source : AD8

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