|
|
eF-site ID
|
6h67-J |
|
PDB Code
|
6h67 |
|
Chain
|
J |
|
click to enlarge
|
|
|
Title
|
Yeast RNA polymerase I elongation complex stalled by cyclobutane pyrimidine dimer (CPD) |
|
Classification
|
TRANSCRIPTION |
|
Compound
|
DNA-directed RNA polymerase I subunit RPA190 |
|
Source
|
ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); |
|
|
Sequence
|
J: |
MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLG
LKRYCCRRMILTHVDLIEKFLRYNPLEKR
|
|
|
Description
|
(1) |
DNA-directed RNA polymerase I subunit RPA190, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerases I and III subunit RPAC1, DNA-directed RNA polymerase I subunit RPA14, DNA-directed RNA polymerases I, II, and III subunit RPABC1, DNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerase I subunit RPA43, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerases I and III subunit RPAC2, DNA-directed RNA polymerases I, II, and III subunit RPABC4, DNA-directed RNA polymerase I subunit RPA49, DNA-directed RNA polymerase I subunit RPA34/RNA Complex
|
|
Functional site
|
|
|
1)
|
chain |
J |
| residue |
7 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN J 3001
|
| source |
: AC6
|
|
|
2)
|
chain |
J |
| residue |
10 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN J 3001
|
| source |
: AC6
|
|
|
3)
|
chain |
J |
| residue |
45 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN J 3001
|
| source |
: AC6
|
|
|
4)
|
chain |
J |
| residue |
46 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN J 3001
|
| source |
: AC6
|
|
|
5)
|
chain |
J |
| residue |
45 |
| type |
MOD_RES |
| sequence |
C
|
| description |
Phosphoserine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:19779198
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
6)
|
chain |
J |
| residue |
46 |
| type |
MOD_RES |
| sequence |
C
|
| description |
Phosphoserine => ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:19779198
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
7)
|
chain |
J |
| residue |
2-11 |
| type |
prosite |
| sequence |
IVPVRCFSCG
|
| description |
RNA_POL_N_8KD RNA polymerases N / 8 Kd subunits signature. IVPVrCFSCG
|
| source |
prosite : PS01112
|
|
|
|