eF-site ID 6gsn-123
PDB Code 6gsn
Chain 1, 2, 3
Title Structure of a partial yeast 48S preinitiation complex in closed conformation
Classification RIBOSOME
Compound 18S rRNA (1798-MER)
Source ORGANISM_SCIENTIFIC: Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37); ORGANISM_COMMON: Yeast;
Sequence 1:  AGCGCCGUGGCGCAGUGGAAGCGCGCAGGUCUCAUAAACC
UGAUGUCCUCGGAUCGAAACCGAGCGGCGCUACCA
2:  UAUCUGGUUGAUCCUGCCAGUAGUCAUAUGCUUGUCUCAA
AGAUUAAGCCAUGCAUGUCUAAGUAUAAGCAAUUUAUACA
GUGAAACUGCGAAUGGCUCAUUAAAUCAGUUAUCGUUUAU
UUGAUAGUUCCUUUACUACAUGGAUAUCUGUGGUAAUUCU
AGAGCUAAUACAUGCUUAAAAUCUCGACCCUUUGGAAGAG
AUGUAUUUAUUAGAUAAAAAAUCAAUGUCUUCGGACUCCU
UGAUGAUUCAUAAUAACUUUUCGAAUCGCAUGGCCUUGUG
CUGGCGAUGGUUCAUUCAAAUUUCUGCCCUAUCAACUUUC
GAUGGUAGGAUAGUGGCCUACCAUGGUUUCAACGGGUAAC
GGGGAAUAAGGGUUCGAUUCCGGAGAGGGAGCCUGAGAAA
CGGCUACCACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUA
CCCAAUCCUAAUUCAGGGAGGUAGUGACAAUAAAUAACGA
UACAGGGCCCAUUCGGGUCUUGUAAUUGGAAUGAGUACAA
UGUAAAUACCUUAACGAGGAACAACUGGAGGGCAAGUCUG
GUGCCAGCAGCCGCGGUAAUUCCAGCUCCAGUAGCGUAUA
UUAAAGUUGUUGCAGUUAAAAAGCUCGUAGUUGAACUUUG
GGUCUGGUUGUCCGGUCCGACUUUAUGUCGCGCACUGGUU
UUCAACCGGAUCUUUCCUUCUGGCUAACCUGUACUCCUUG
UGGGUGCAGGCGAACCAGGACUUUUACUUUGAAAAAAUUA
GAGUGUUCAAAGCAGGCGAAAGCUCGAAUAUAUUAGCAUG
GAAUAAUGGAAUAGGACGUUUGGUUCUAUUUUGUUGGUUU
CUAGGACCAUCGUAAUGAUUAAUAGGGACGGUCGGGGGCA
UCAGUAUUCAAUUGUCAGAGGUGAAAUUCUUGGAUUUAUU
GAAGACUAACUACUGCGAAAGCAUUUGCCAAGGACGUUUU
CAUUAAUCAAGAACGAAAGUUAGGGGAUCGAAGAUGAUCA
GAUACCGUCGUAGUCUUAACCAUAAACUAUGCCGACUAGG
GAUCGGGUGGUGUUUUUCUUAUGACCCACUCGGCACCUUA
CGAGAAAUCAAAGUCUUUGGGUUCUGGGGGGAGUAUGGUC
GCAAGGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCAC
CAGGAGUGGAGCCUGCGGCUUAAUUUGACUCAACACGGGG
AAACUCACCAGGUCCAGACACAAUAAGGAUUGACAGAUUG
AGAGCUCUUUCUUGAUUUUGUGGGUGGUGGUGCAUGGCCG
UUCUUAGUUGGUGGAGUGAUUUGUCUGCUUAAUUGCGAUA
ACGAACGAGACCUUAACCUACUAAAUAGGGUUGCUGGCAC
UUGCCGGUUGACUCUUCUUAGAGGGACUAUCGGUUUCAAG
CCGAUGGAAGUUUGAGGCAAUAACAGGUCUGUGAUGCCCU
UAGACGUUCUGGGCCGCACGCGCGCUACACUGACGGAGCC
AGCGAGUACAACCUUGGCCGAGAGGUCUGGGUAAUCUUGU
GAAACUCCGUCGUGCUGGGGAUAGAGCAUUGUAAUUAUUG
CUCUUCAACGAGGAAUUCCUAGUAAGCGCAAGUCAUCAGC
UUGCGUUGAUUACGUCCCUGCCCUUUGUACACACCGCCCG
UCGCUAGUACCGAUUGAAUGGCUUAGUGAGGCCUCAGGAU
UUGCUUAGAGAAGGGGGCAACUCCAUCUCAGAGCGAAGAA
UCUGGUCAAACUUGGUCAUUUAGAGGAACUAAAAGUCGUA
ACAAGGUUUCCGUAGGUGAACCUGCGGAAGGAUCAUUA
3:  AUCUCUCUCUAUGC
Description


Functional site

1) chain 2
residue 361
type
sequence G
description binding site for residue MG 2 1801
source : AC1

2) chain 2
residue 362
type
sequence G
description binding site for residue MG 2 1801
source : AC1

3) chain 2
residue 93
type
sequence A
description binding site for residue MG 2 1802
source : AC2

4) chain 2
residue 95
type
sequence G
description binding site for residue MG 2 1802
source : AC2

5) chain 2
residue 402
type
sequence G
description binding site for residue MG 2 1802
source : AC2

6) chain 2
residue 553
type
sequence C
description binding site for residue MG 2 1803
source : AC3

7) chain 2
residue 554
type
sequence A
description binding site for residue MG 2 1803
source : AC3

8) chain 2
residue 555
type
sequence A
description binding site for residue MG 2 1803
source : AC3

9) chain 2
residue 44
type
sequence U
description binding site for residue MG 2 1804
source : AC4

10) chain 2
residue 100
type
sequence A
description binding site for residue MG 2 1804
source : AC4

11) chain 2
residue 1024
type
sequence A
description binding site for residue MG 2 1805
source : AC5

12) chain 2
residue 549
type
sequence A
description binding site for residue MG 2 1806
source : AC6

13) chain 2
residue 556
type
sequence G
description binding site for residue MG 2 1806
source : AC6

14) chain 2
residue 49
type
sequence C
description binding site for residue MG 2 1807
source : AC7

15) chain 2
residue 424
type
sequence A
description binding site for residue MG 2 1807
source : AC7

16) chain 2
residue 992
type
sequence A
description binding site for residue MG 2 1808
source : AC8

17) chain 2
residue 1776
type
sequence G
description binding site for residue MG 2 1808
source : AC8

18) chain 2
residue 1329
type
sequence G
description binding site for residue MG 2 1809
source : AC9

19) chain 2
residue 1331
type
sequence C
description binding site for residue MG 2 1809
source : AC9

20) chain 2
residue 1417
type
sequence G
description binding site for residue MG 2 1809
source : AC9

21) chain 2
residue 1418
type
sequence C
description binding site for residue MG 2 1809
source : AC9

22) chain 2
residue 573
type
sequence G
description binding site for residue MG 2 1810
source : AD1

23) chain 2
residue 1137
type
sequence A
description binding site for residue MG 2 1810
source : AD1

24) chain 2
residue 928
type
sequence A
description binding site for residue MG 2 1811
source : AD2

25) chain 2
residue 929
type
sequence A
description binding site for residue MG 2 1811
source : AD2

26) chain 2
residue 1761
type
sequence A
description binding site for residue MG 2 1812
source : AD3

27) chain 2
residue 1765
type
sequence G
description binding site for residue MG 2 1812
source : AD3

28) chain 2
residue 1766
type
sequence G
description binding site for residue MG 2 1812
source : AD3

29) chain 2
residue 1769
type
sequence U
description binding site for residue MG 2 1812
source : AD3

30) chain 2
residue 392
type
sequence C
description binding site for residue MG 2 1814
source : AD4

31) chain 2
residue 399
type
sequence A
description binding site for residue MG 2 1814
source : AD4

32) chain 2
residue 400
type
sequence A
description binding site for residue MG 2 1814
source : AD4

33) chain 2
residue 403
type
sequence G
description binding site for residue MG 2 1814
source : AD4

34) chain 2
residue 16
type
sequence G
description binding site for residue MG 2 1815
source : AD5

35) chain 2
residue 607
type
sequence U
description binding site for residue MG 2 1815
source : AD5

36) chain 2
residue 376
type
sequence G
description binding site for residue MG 2 1816
source : AD6

37) chain 2
residue 377
type
sequence A
description binding site for residue MG 2 1816
source : AD6

38) chain 2
residue 378
type
sequence U
description binding site for residue MG 2 1816
source : AD6

39) chain 2
residue 28
type
sequence A
description binding site for residue MG 2 1817
source : AD7

40) chain 2
residue 436
type
sequence A
description binding site for residue MG 2 1817
source : AD7

41) chain 2
residue 370
type
sequence G
description binding site for residue MG 2 1818
source : AD8

42) chain 2
residue 371
type
sequence G
description binding site for residue MG 2 1818
source : AD8

43) chain 2
residue 604
type
sequence A
description binding site for residue MG 2 1818
source : AD8

44) chain 2
residue 606
type
sequence G
description binding site for residue MG 2 1818
source : AD8

45) chain 2
residue 612
type
sequence G
description binding site for residue MG 2 1818
source : AD8

46) chain 2
residue 995
type
sequence U
description binding site for residue MG 2 1819
source : AD9

47) chain 2
residue 996
type
sequence G
description binding site for residue MG 2 1819
source : AD9

48) chain 2
residue 997
type
sequence A
description binding site for residue MG 2 1819
source : AD9

49) chain 2
residue 1003
type
sequence U
description binding site for residue MG 2 1819
source : AD9

50) chain 2
residue 42
type
sequence G
description binding site for residue MG 2 1820
source : AE1

51) chain 2
residue 44
type
sequence U
description binding site for residue MG 2 1821
source : AE2

52) chain 2
residue 46
type
sequence A
description binding site for residue MG 2 1821
source : AE2

53) chain 2
residue 47
type
sequence A
description binding site for residue MG 2 1821
source : AE2

54) chain 2
residue 1760
type
sequence A
description binding site for residue MG 2 1822
source : AE3

55) chain 2
residue 1761
type
sequence A
description binding site for residue MG 2 1822
source : AE3

56) chain 2
residue 1766
type
sequence G
description binding site for residue MG 2 1822
source : AE3

57) chain 2
residue 617
type
sequence U
description binding site for residue MG 2 1823
source : AE4

58) chain 2
residue 618
type
sequence A
description binding site for residue MG 2 1823
source : AE4

59) chain 2
residue 619
type
sequence A
description binding site for residue MG 2 1823
source : AE4

60) chain 2
residue 620
type
sequence A
description binding site for residue MG 2 1823
source : AE4

61) chain 2
residue 562
type
sequence U
description binding site for residue MG 2 1824
source : AE5

62) chain 2
residue 563
type
sequence G
description binding site for residue MG 2 1824
source : AE5

63) chain 2
residue 578
type
sequence A
description binding site for residue MG 2 1824
source : AE5

64) chain 2
residue 579
type
sequence A
description binding site for residue MG 2 1824
source : AE5

65) chain 2
residue 618
type
sequence A
description binding site for residue MG 2 1825
source : AE6

66) chain 2
residue 619
type
sequence A
description binding site for residue MG 2 1825
source : AE6

67) chain 2
residue 620
type
sequence A
description binding site for residue MG 2 1825
source : AE6

68) chain 2
residue 1328
type
sequence A
description binding site for residue MG 2 1826
source : AE7

69) chain 2
residue 1329
type
sequence G
description binding site for residue MG 2 1826
source : AE7

70) chain 2
residue 1330
type
sequence A
description binding site for residue MG 2 1826
source : AE7

71) chain 2
residue 621
type
sequence A
description binding site for residue MG 2 1827
source : AE8

72) chain 2
residue 622
type
sequence A
description binding site for residue MG 2 1827
source : AE8

73) chain 2
residue 100
type
sequence A
description binding site for residue MG 2 1828
source : AE9

74) chain 2
residue 101
type
sequence U
description binding site for residue MG 2 1828
source : AE9

75) chain 2
residue 358
type
sequence A
description binding site for residue MG 2 1828
source : AE9

76) chain 2
residue 360
type
sequence C
description binding site for residue MG 2 1828
source : AE9

77) chain 2
residue 604
type
sequence A
description binding site for residue MG 2 1829
source : AF1

78) chain 2
residue 1109
type
sequence G
description binding site for residue MG 2 1830
source : AF2

79) chain 2
residue 1110
type
sequence G
description binding site for residue MG 2 1830
source : AF2

80) chain 2
residue 95
type
sequence G
description binding site for residue MG 2 1831
source : AF3

81) chain 2
residue 1725
type
sequence G
description binding site for residue MG 2 1832
source : AF4

82) chain 2
residue 1726
type
sequence U
description binding site for residue MG 2 1832
source : AF4

83) chain 2
residue 1628
type
sequence U
description binding site for residue MG 2 1833
source : AF5

84) chain 2
residue 1790
type
sequence G
description binding site for residue MG 2 1833
source : AF5

85) chain 2
residue 1791
type
sequence G
description binding site for residue MG 2 1833
source : AF5

86) chain 2
residue 64
type
sequence U
description binding site for residue MG 2 1834
source : AF6

87) chain 2
residue 65
type
sequence A
description binding site for residue MG 2 1834
source : AF6

88) chain 2
residue 460
type
sequence G
description binding site for residue MG 2 1836
source : AF7

89) chain 2
residue 466
type
sequence G
description binding site for residue MG 2 1837
source : AF8

90) chain 2
residue 624
type
sequence C
description binding site for residue MG 2 1838
source : AF9

91) chain 2
residue 984
type
sequence G
description binding site for residue MG 2 1839
source : AG1

92) chain 2
residue 985
type
sequence G
description binding site for residue MG 2 1839
source : AG1

93) chain 2
residue 986
type
sequence G
description binding site for residue MG 2 1839
source : AG1

94) chain 2
residue 309
type
sequence C
description binding site for residue MG 2 1842
source : AG2

95) chain 2
residue 310
type
sequence U
description binding site for residue MG 2 1842
source : AG2

96) chain 2
residue 354
type
sequence G
description binding site for residue MG 2 1842
source : AG2

97) chain 2
residue 355
type
sequence G
description binding site for residue MG 2 1842
source : AG2

98) chain 2
residue 1005
type
sequence C
description binding site for residue MG 2 1843
source : AG3

99) chain 2
residue 421
type
sequence G
description binding site for residue MG 2 1844
source : AG4

100) chain 2
residue 422
type
sequence G
description binding site for residue MG 2 1844
source : AG4

101) chain 2
residue 1302
type
sequence U
description binding site for residue MG 2 1845
source : AG5

102) chain 2
residue 1303
type
sequence G
description binding site for residue MG 2 1845
source : AG5

103) chain 2
residue 1304
type
sequence U
description binding site for residue MG 2 1845
source : AG5

104) chain 2
residue 977
type
sequence A
description binding site for residue MG 2 1846
source : AG6

105) chain 2
residue 978
type
sequence A
description binding site for residue MG 2 1846
source : AG6

106) chain 2
residue 57
type
sequence G
description binding site for residue MG 2 1847
source : AG7

107) chain 2
residue 58
type
sequence U
description binding site for residue MG 2 1847
source : AG7

108) chain 2
residue 760
type
sequence A
description binding site for residue MG 2 1848
source : AG8

109) chain 2
residue 761
type
sequence G
description binding site for residue MG 2 1848
source : AG8

110) chain 2
residue 1139
type
sequence G
description binding site for residue MG 2 1849
source : AG9

111) chain 2
residue 1140
type
sequence G
description binding site for residue MG 2 1849
source : AG9

112) chain 2
residue 826
type
sequence C
description binding site for residue MG 2 1850
source : AH1

113) chain 2
residue 843
type
sequence A
description binding site for residue MG 2 1850
source : AH1

114) chain 2
residue 529
type
sequence C
description binding site for residue MG 2 1851
source : AH2

115) chain 2
residue 1293
type
sequence G
description binding site for residue MG 2 1852
source : AH3

116) chain 2
residue 1301
type
sequence U
description binding site for residue MG 2 1852
source : AH3

117) chain 2
residue 1302
type
sequence U
description binding site for residue MG 2 1852
source : AH3

118) chain 2
residue 937
type
sequence G
description binding site for residue MG 2 1853
source : AH4

119) chain 2
residue 939
type
sequence A
description binding site for residue MG 2 1853
source : AH4

120) chain 2
residue 988
type
sequence U
description binding site for residue MG 2 1854
source : AH5

121) chain 2
residue 1010
type
sequence G
description binding site for residue MG 2 1854
source : AH5

122) chain 2
residue 211
type
sequence U
description binding site for residue MG 2 1855
source : AH6

123) chain 2
residue 212
type
sequence A
description binding site for residue MG 2 1855
source : AH6

124) chain 2
residue 1537
type
sequence G
description binding site for residue MG 2 1856
source : AH7

125) chain 2
residue 1538
type
sequence G
description binding site for residue MG 2 1856
source : AH7

126) chain 2
residue 1539
type
sequence G
description binding site for residue MG 2 1856
source : AH7

127) chain 2
residue 334
type
sequence U
description binding site for residue MG 2 1857
source : AH8

128) chain 2
residue 335
type
sequence G
description binding site for residue MG 2 1857
source : AH8

129) chain 2
residue 874
type
sequence G
description binding site for residue MG 2 1858
source : AH9

130) chain 2
residue 875
type
sequence G
description binding site for residue MG 2 1858
source : AH9

131) chain 2
residue 378
type
sequence U
description binding site for residue MG 2 1859
source : AI1

132) chain 2
residue 379
type
sequence U
description binding site for residue MG 2 1859
source : AI1

133) chain 2
residue 1007
type
sequence G
description binding site for residue MG 2 1860
source : AI2

134) chain 2
residue 1054
type
sequence U
description binding site for residue MG 2 1861
source : AI3

135) chain 2
residue 923
type
sequence A
description binding site for residue MG 2 1862
source : AI4

136) chain 2
residue 1393
type
sequence G
description binding site for residue MG 2 1863
source : AI5

137) chain 2
residue 1281
type
sequence U
description binding site for residue MG 2 1864
source : AI6

138) chain 2
residue 1282
type
sequence U
description binding site for residue MG 2 1864
source : AI6

139) chain 2
residue 1284
type
sequence U
description binding site for residue MG 2 1864
source : AI6

140) chain 2
residue 1466
type
sequence U
description binding site for residue MG 2 1865
source : AI7

141) chain 2
residue 1467
type
sequence A
description binding site for residue MG 2 1865
source : AI7

142) chain 2
residue 1540
type
sequence G
description binding site for residue MG 2 1865
source : AI7

143) chain 2
residue 1444
type
sequence A
description binding site for residue MG 2 1866
source : AI8

144) chain 2
residue 1445
type
sequence C
description binding site for residue MG 2 1866
source : AI8

145) chain 2
residue 1199
type
sequence G
description binding site for residue MG 2 1867
source : AI9

146) chain 2
residue 1198
type
sequence G
description binding site for residue MG 2 1868
source : AJ1

147) chain 2
residue 1199
type
sequence G
description binding site for residue MG 2 1868
source : AJ1

148) chain 2
residue 1200
type
sequence G
description binding site for residue MG 2 1868
source : AJ1

149) chain 2
residue 1270
type
sequence G
description binding site for residue MG 2 1869
source : AJ2

150) chain 2
residue 1271
type
sequence U
description binding site for residue MG 2 1869
source : AJ2

151) chain 2
residue 1429
type
sequence C
description binding site for residue MG 2 1869
source : AJ2

152) chain 2
residue 1436
type
sequence G
description binding site for residue MG 2 1869
source : AJ2

153) chain 2
residue 1437
type
sequence C
description binding site for residue MG 2 1869
source : AJ2

154) chain 2
residue 1195
type
sequence A
description binding site for residue MG 2 1870
source : AJ3

155) chain 2
residue 1196
type
sequence C
description binding site for residue MG 2 1870
source : AJ3

156) chain 2
residue 1267
type
sequence G
description binding site for residue MG 2 1871
source : AJ4

157) chain 2
residue 1268
type
sequence U
description binding site for residue MG 2 1871
source : AJ4

158) chain 2
residue 1272
type
sequence G
description binding site for residue MG 2 1872
source : AJ5

159) chain 2
residue 1273
type
sequence C
description binding site for residue MG 2 1872
source : AJ5

160) chain 2
residue 1426
type
sequence G
description binding site for residue MG 2 1872
source : AJ5

161) chain 2
residue 1539
type
sequence G
description binding site for residue MG 2 1873
source : AJ6

162) chain 2
residue 1540
type
sequence G
description binding site for residue MG 2 1873
source : AJ6

163) chain 2
residue 1566
type
sequence C
description binding site for residue MG 2 1873
source : AJ6

164) chain 2
residue 1567
type
sequence A
description binding site for residue MG 2 1873
source : AJ6

165) chain 2
residue 1482
type
sequence G
description binding site for residue MG 2 1874
source : AJ7

166) chain 2
residue 1519
type
sequence G
description binding site for residue MG 2 1874
source : AJ7

167) chain 2
residue 1520
type
sequence U
description binding site for residue MG 2 1874
source : AJ7

168) chain 2
residue 1273
type
sequence C
description binding site for residue MG 2 1875
source : AJ8

169) chain 2
residue 1425
type
sequence A
description binding site for residue MG 2 1875
source : AJ8

170) chain 2
residue 1426
type
sequence G
description binding site for residue MG 2 1875
source : AJ8

171) chain 2
residue 1200
type
sequence G
description binding site for residue MG 2 1876
source : AJ9

172) chain 2
residue 1201
type
sequence A
description binding site for residue MG 2 1876
source : AJ9

173) chain 2
residue 1202
type
sequence A
description binding site for residue MG 2 1876
source : AJ9

174) chain 2
residue 1046
type
sequence G
description binding site for residue MG B 301
source : AK8

175) chain 2
residue 1764
type
sequence A
description binding site for residue MG a 102
source : AL1


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