eF-site ID 6gml-J
PDB Code 6gml
Chain J

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Title Structure of paused transcription complex Pol II-DSIF-NELF
Classification TRANSCRIPTION
Compound DNA-directed RNA polymerase subunit
Source ORGANISM_COMMON: Pig; ORGANISM_SCIENTIFIC: Sus scrofa;
Sequence J:  MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGL
KRYCCRRMLLAHVDLIEKLLNYAPLEK
Description (1)  DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit C, RNA polymerase II subunit E, RNA polymerase II subunit F, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, Uncharacterized protein, Negative elongation factor A, Negative elongation factor B, Negative elongation factor C/D, Negative elongation factor E, Transcription elongation factor SPT4, Transcription elongation factor SPT5, RNA polymerase II subunit D, RNA polymerase II subunit G/DNA Complex


Functional site

1) chain J
residue 7
type
sequence C
description binding site for residue ZN J 101
source : AC8

2) chain J
residue 10
type
sequence C
description binding site for residue ZN J 101
source : AC8

3) chain J
residue 44
type
sequence C
description binding site for residue ZN J 101
source : AC8

4) chain J
residue 45
type
sequence C
description binding site for residue ZN J 101
source : AC8

5) chain J
residue 2-11
type prosite
sequence IIPVRCFTCG
description RNA_POL_N_8KD RNA polymerases N / 8 Kd subunits signature. IIPVrCFTCG
source prosite : PS01112


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