eF-site ID 6gml-B
PDB Code 6gml
Chain B

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Title Structure of paused transcription complex Pol II-DSIF-NELF
Classification TRANSCRIPTION
Compound DNA-directed RNA polymerase subunit
Source ORGANISM_COMMON: Pig; ORGANISM_SCIENTIFIC: Sus scrofa;
Sequence B:  EITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSV
QRIVEDAPPIDLQPPRYLLKFEQIYLSKPTHWDGAPSPMM
PNEARLRNLTYSAPLYVDITKTVQLQTQHQKTFIGKIPIM
LRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLI
AQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTI
WVSMLARQRIVATLPYIKQEVPIIIVFRALGFVSDRDILE
HIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGA
KPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLG
YMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG
MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKY
SLATGNWGDARAGVSQVLNRLTFASTLSHLRRLNSPIGRD
GKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYI
SVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGC
WVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI
RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYS
WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST
YTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA
MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFREL
PAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYR
SYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDG
LIAPGVRVSGDDVIIGKTVTLPENEDRRYTKRDCSTFLRT
SETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASR
HGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTI
GHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDY
GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK
IHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHG
AAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECR
GCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
Description


Functional site

1) chain B
residue 1119
type
sequence C
description binding site for residue ZN B 2000
source : AC4

2) chain B
residue 1122
type
sequence C
description binding site for residue ZN B 2000
source : AC4

3) chain B
residue 1137
type
sequence C
description binding site for residue ZN B 2000
source : AC4

4) chain B
residue 1140
type
sequence C
description binding site for residue ZN B 2000
source : AC4

5) chain B
residue 932-944
type prosite
sequence GDKFASRHGQKGT
description RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
source prosite : PS01166


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