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eF-site ID
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6gml-B |
PDB Code
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6gml |
Chain
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B |
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click to enlarge
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Title
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Structure of paused transcription complex Pol II-DSIF-NELF |
Classification
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TRANSCRIPTION |
Compound
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DNA-directed RNA polymerase subunit |
Source
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ORGANISM_COMMON: Pig; ORGANISM_SCIENTIFIC: Sus scrofa; |
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Sequence
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B: |
EITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSV
QRIVEDAPPIDLQPPRYLLKFEQIYLSKPTHWDGAPSPMM
PNEARLRNLTYSAPLYVDITKTVQLQTQHQKTFIGKIPIM
LRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLI
AQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTI
WVSMLARQRIVATLPYIKQEVPIIIVFRALGFVSDRDILE
HIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGA
KPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLG
YMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG
MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKY
SLATGNWGDARAGVSQVLNRLTFASTLSHLRRLNSPIGRD
GKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYI
SVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGC
WVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI
RIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYS
WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST
YTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQA
MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFREL
PAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYR
SYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDG
LIAPGVRVSGDDVIIGKTVTLPENEDRRYTKRDCSTFLRT
SETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASR
HGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTI
GHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDY
GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK
IHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHG
AAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECR
GCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
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Description
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Functional site
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1)
|
chain |
B |
residue |
1119 |
type |
|
sequence |
C
|
description |
binding site for residue ZN B 2000
|
source |
: AC4
|
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2)
|
chain |
B |
residue |
1122 |
type |
|
sequence |
C
|
description |
binding site for residue ZN B 2000
|
source |
: AC4
|
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3)
|
chain |
B |
residue |
1137 |
type |
|
sequence |
C
|
description |
binding site for residue ZN B 2000
|
source |
: AC4
|
|
4)
|
chain |
B |
residue |
1140 |
type |
|
sequence |
C
|
description |
binding site for residue ZN B 2000
|
source |
: AC4
|
|
5)
|
chain |
B |
residue |
932-944 |
type |
prosite |
sequence |
GDKFASRHGQKGT
|
description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
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source |
prosite : PS01166
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