eF-site ID 6gga-AB
PDB Code 6gga
Chain A, B

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Title p53 cancer mutant Y220C in complex with small-molecule stabilizer PK9284
Classification DNA BINDING PROTEIN
Compound Cellular tumor antigen p53
Source (P53_HUMAN)
Sequence A:  SVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKLFC
QLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRR
CPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFRHS
VVVPCEPPEVGSDCTTIHYNYMCYSSCMGGMNRRPILTII
TLEDSSGNLLGRDSFEVRVCACPGRDRRTEEENLRK
B:  SSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKL
FCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVV
RRCPHHERCSDSDGLAPPQHLIRVEGNLRAEYLDDRNTFR
HSVVVPCEPPEVGSDCTTIHYNYMCYSSCMGGMNRRPILT
IITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEENLRK
Description (1)  Cellular tumor antigen p53


Functional site

1) chain A
residue 145
type
ligand
sequence L
description binding site for residue EY2 A 401
source : AC1

2) chain A
residue 147
type
ligand
sequence V
description binding site for residue EY2 A 401
source : AC1

3) chain A
residue 150
type
ligand
sequence T
description binding site for residue EY2 A 401
source : AC1

4) chain A
residue 220
type
ligand
sequence C
description binding site for residue EY2 A 401
source : AC1

5) chain A
residue 221
type
ligand
sequence E
description binding site for residue EY2 A 401
source : AC1

6) chain A
residue 222
type
ligand
sequence P
description binding site for residue EY2 A 401
source : AC1

7) chain A
residue 223
type
ligand
sequence P
description binding site for residue EY2 A 401
source : AC1

8) chain A
residue 228
type
ligand
sequence D
description binding site for residue EY2 A 401
source : AC1

9) chain A
residue 230
type
ligand
sequence T
description binding site for residue EY2 A 401
source : AC1

10) chain A
residue 176
type
ligand
sequence C
description binding site for residue ZN A 402
source : AC2

11) chain A
residue 179
type
ligand
sequence H
description binding site for residue ZN A 402
source : AC2

12) chain A
residue 238
type
ligand
sequence C
description binding site for residue ZN A 402
source : AC2

13) chain A
residue 242
type
ligand
sequence C
description binding site for residue ZN A 402
source : AC2

14) chain B
residue 145
type
ligand
sequence L
description binding site for residue EY2 B 401
source : AC3

15) chain B
residue 147
type
ligand
sequence V
description binding site for residue EY2 B 401
source : AC3

16) chain B
residue 150
type
ligand
sequence T
description binding site for residue EY2 B 401
source : AC3

17) chain B
residue 220
type
ligand
sequence C
description binding site for residue EY2 B 401
source : AC3

18) chain B
residue 221
type
ligand
sequence E
description binding site for residue EY2 B 401
source : AC3

19) chain B
residue 222
type
ligand
sequence P
description binding site for residue EY2 B 401
source : AC3

20) chain B
residue 223
type
ligand
sequence P
description binding site for residue EY2 B 401
source : AC3

21) chain B
residue 228
type
ligand
sequence D
description binding site for residue EY2 B 401
source : AC3

22) chain B
residue 230
type
ligand
sequence T
description binding site for residue EY2 B 401
source : AC3

23) chain B
residue 176
type
ligand
sequence C
description binding site for residue ZN B 402
source : AC4

24) chain B
residue 179
type
ligand
sequence H
description binding site for residue ZN B 402
source : AC4

25) chain B
residue 238
type
ligand
sequence C
description binding site for residue ZN B 402
source : AC4

26) chain B
residue 242
type
ligand
sequence C
description binding site for residue ZN B 402
source : AC4

27) chain A
residue 145-147
type binding
ligand EY2: (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium
sequence LWV
description (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium binding site
source pdb_hetatom : EY2_6gga_A_401

28) chain A
residue 150-151
type binding
ligand EY2: (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium
sequence TP
description (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium binding site
source pdb_hetatom : EY2_6gga_A_401

29) chain A
residue 220-223
type binding
ligand EY2: (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium
sequence CEPP
description (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium binding site
source pdb_hetatom : EY2_6gga_A_401

30) chain A
residue 227-230
type binding
ligand EY2: (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium
sequence SDCT
description (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium binding site
source pdb_hetatom : EY2_6gga_A_401

31) chain B
residue 145-147
type binding
ligand EY2: (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium
sequence LWV
description (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium binding site
source pdb_hetatom : EY2_6gga_B_401

32) chain B
residue 150-152
type binding
ligand EY2: (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium
sequence TPP
description (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium binding site
source pdb_hetatom : EY2_6gga_B_401

33) chain B
residue 220-223
type binding
ligand EY2: (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium
sequence CEPP
description (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium binding site
source pdb_hetatom : EY2_6gga_B_401

34) chain B
residue 228-230
type binding
ligand EY2: (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium
sequence DCT
description (7-bromanyl-9-ethyl-carbazol-3-yl)methyl-methyl-azanium binding site
source pdb_hetatom : EY2_6gga_B_401


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