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eF-site ID
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6gc8-AB |
PDB Code
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6gc8 |
Chain
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A, B |
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click to enlarge
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Title
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50S ribosomal subunit assembly intermediate - 50S rec* |
Classification
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RIBOSOME |
Compound
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23S ribosomal RNA |
Source
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ORGANISM_SCIENTIFIC: Escherichia coli K-12; |
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Sequence
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A: |
GGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAGU
CAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCG
GUAAGGUGAUAUGAACCGUUAUAACCGGCGAUUUCCGAAU
GGGGAAACCCAGUGUGUUUCGACACACUAUCAUUAACUGA
AUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAACAU
CUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCC
AGUAGCGGCGAGCGAACGGGGAGCAGCCCAGAGCCUGAAU
CAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGA
UACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGU
GAGCUCGAUGAGUAGGGCGGGACACGUGGUAUCCUGUCUG
AAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGAC
UGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAA
GAACCCCGGCGAGGGGAGUGAAAAAGAACCUGAAACCGUG
UACGUACAAGCAGUGGGAGCACGCUUAGGCGUGUGACUGC
GUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAG
CAAGGUUAACCGAAUAGGGGAGCCGAAGGGAAACCGAGUC
UUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCC
GGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACU
AACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGG
AUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGA
GAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUC
GUGAAUUCAUCUCCGGGGGUAGAGCACUGUUUCGGCAAGG
GGGUCACUUACCAACCCGAUGCAAACUGCGAAUACCGGAG
AAUGUUAUCACGGGAGACACACGGCGGGUGCUAACGUCCG
UCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCC
CAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCCCA
GACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAA
GAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGCGGA
AGAUGUAACGGGGCUAAACCAUGCACCGAAGCUGCGGCAG
CGACGCUUAUGCGUUGUUGGGUAGGGGAGCGUUCUGUAAG
CCUGCGAAGGUGUGCUGUGAGGCAUGCUGGAGGUAUCAGA
AGUGCGAAUGCUGACAUAAGUAACGAUAAAGCGGGUGAAA
AGCCCGCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUU
AAUCGGGGCAGGGUGAGUCGACCCCUAAGGCGAGGCCGAA
AGGCGUAGUCGAUGGGAAACAGGUUAAUAUUCCUGUACUU
GGUGUUACUGCGAAGGGGGGACGGAGAAGGCUAUGUUGGC
CGGGCGACGGUUGUCCCGGUUUAAGCGUGUAGGCUGGUUU
UCCAGGCAAAUCCGGAAAAUCAAGGCUGAGGCGUGAUGAC
GAGGCACUACGGUGCUGAAGCAACAAAUGCCCUGCUUCCA
GGAAAAGCCUCUAAGCAUCAGGUAACAUCAAAUCGUACCC
CAAACCGACACAGGUGGUCAGGUAGAGAAUACCAAGGCGC
UUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCC
GUAACUUCGGGAGAAGGCACGCUGAUAUGUAGGUGAGGUC
CCUCGCGGAUGGAGCUGAAAUCAGUCGAAGAUACCAGCUG
GCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACAC
GAAAGUGGACGUAUACGGUGUGACGCCUGCCCGGUGCCGG
AAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAU
CGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCU
AAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCA
CGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGAC
UCAGUGAAAUUGAACUCGCUGUGAAGAUGCAGUGUACCCG
CGGCAAGACGGAAAGACCCCGUGAACCUUUACUAUAGCUU
GACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGA
GGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCU
UGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACGUUGAC
CCGUAAUCCGGGUUGCGGACAGUGUCUGGUGGGUAGUUUG
ACUGGGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGCACG
AAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGC
AAUGGCAUAAGCCAGCUUGACUGCGAGCGUGACGGCGCGA
GCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGUUCUGA
AUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGGG
GAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGC
GGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGG
CUGAAGUAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAA
GUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUC
GGUCCCUAUCUGCCGUGGGCGCUGGAGAACUGAGGGGGGC
UGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGG
UGUUCGGGUUGUCAUGCCAAUGGCACUGCCCGGUAGCUAA
AUGCGGAAGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAA
CUUGCCCCGAGAUGAGUUCUCCCUGACCCUUUAAGGGUCC
UGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGGUG
UGUAAGCGCAGCGAUGCGUUGAGCUAACCGGUACUAAUGA
ACCGUGAGGCUUAACCU
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B: |
UGCCUGGCGGCCGUAGCGCGGUGGUCCCACCUGACCCCAU
GCCGAACUCAGAAGUGAAACGCCGUAGCGCCGAUGGUAGU
GUGGGGUCUCCCCAUGCGAGAGUAGGGAACUGCCAGGCA
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Description
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(1) |
50S ribosomal protein L2, 50S ribosomal protein L3, 50S ribosomal protein L4, 50S ribosomal protein L5, 50S ribosomal protein L6, 50S ribosomal protein L9, 50S ribosomal protein L13, 50S ribosomal protein L14, 50S ribosomal protein L15, 50S ribosomal protein L16, 50S ribosomal protein L17, 50S ribosomal protein L18, 50S ribosomal protein L19, 50S ribosomal protein L20, 50S ribosomal protein L21, 50S ribosomal protein L22, 50S ribosomal protein L23, 50S ribosomal protein L24, 50S ribosomal protein L25, 50S ribosomal protein L27, 50S ribosomal protein L28, 50S ribosomal protein L29, 50S ribosomal protein L30, 50S ribosomal protein L32, 50S ribosomal protein L33, 50S ribosomal protein L34, 50S ribosomal protein L35/RNA Complex
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Functional site
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1)
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chain |
A |
residue |
2477 |
type |
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sequence |
U
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description |
binding site for residue ZN A 3001
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source |
: AC1
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2)
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chain |
A |
residue |
2478 |
type |
|
sequence |
A
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description |
binding site for residue ZN A 3001
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source |
: AC1
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3)
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chain |
A |
residue |
2479 |
type |
|
sequence |
U
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description |
binding site for residue ZN A 3001
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source |
: AC1
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4)
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chain |
B |
residue |
57 |
type |
|
sequence |
A
|
description |
binding site for residue MG B 201
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source |
: AC2
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5)
|
chain |
B |
residue |
58 |
type |
|
sequence |
A
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description |
binding site for residue MG B 201
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source |
: AC2
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6)
|
chain |
B |
residue |
95 |
type |
|
sequence |
U
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description |
binding site for residue MG B 202
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source |
: AC3
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7)
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chain |
B |
residue |
100 |
type |
|
sequence |
G
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description |
binding site for residue MG B 203
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source |
: AC4
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8)
|
chain |
B |
residue |
102 |
type |
|
sequence |
G
|
description |
binding site for residue MG B 203
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source |
: AC4
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9)
|
chain |
B |
residue |
46 |
type |
|
sequence |
A
|
description |
binding site for residue MG B 204
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source |
: AC5
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10)
|
chain |
B |
residue |
48 |
type |
|
sequence |
U
|
description |
binding site for residue MG B 204
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source |
: AC5
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