eF-site ID 6g59-B
PDB Code 6g59
Chain B

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Title Structure of the alanine racemase from Staphylococcus aureus in complex with an pyridoxal-6- phosphate derivative
Classification BIOSYNTHETIC PROTEIN
Compound Alanine racemase 1
Source (ALR1_STAAM)
Sequence B:  AGFSDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVV
KANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGI
TAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNI
SGEQEKKLWLHIKLDTGMGRLGIKDTNTYQEVIEIIQQYE
QLVFEGVFTHFACADEPGDMTTEQYQRFKDMVNEAIKPEY
IHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVK
VHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIA
LLPIGYADGYLRIMQGSFVNVNGHQCEVIGRVCMDQTIVK
VPDQVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVLC
NLSRRLPRIYHDGDQRFVTNELLK
Description


Functional site

1) chain B
residue 135
type
sequence G
description binding site for residue NA A 408
source : AC8

2) chain B
residue 136
type
sequence M
description binding site for residue NA A 408
source : AC8

3) chain B
residue 170
type
sequence A
description binding site for residue NA A 408
source : AC8

4) chain B
residue 240
type
sequence H
description binding site for residue SO4 B 402
source : AD1

5) chain B
residue 243
type
sequence P
description binding site for residue SO4 B 402
source : AD1

6) chain B
residue 335
type
sequence H
description binding site for residue SO4 B 402
source : AD1

7) chain B
residue 336
type
sequence R
description binding site for residue SO4 B 402
source : AD1

8) chain B
residue 5
type
sequence Y
description binding site for residue SO4 B 403
source : AD2

9) chain B
residue 10
type
sequence Y
description binding site for residue SO4 B 403
source : AD2

10) chain B
residue 367
type
sequence I
description binding site for residue SO4 B 403
source : AD2

11) chain B
residue 374
type
sequence R
description binding site for residue SO4 B 403
source : AD2

12) chain B
residue 154
type
sequence I
description binding site for residue NA B 404
source : AD3

13) chain B
residue 157
type
sequence Y
description binding site for residue NA B 404
source : AD3

14) chain B
residue 160
type
sequence L
description binding site for residue NA B 404
source : AD3

15) chain B
residue 29
type
sequence H
description binding site for residue CL B 405
source : AD4

16) chain B
residue 31
type
sequence N
description binding site for residue CL B 405
source : AD4

17) chain B
residue 32
type
sequence K
description binding site for residue CL B 405
source : AD4

18) chain B
residue 37
type
sequence V
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

19) chain B
residue 38
type
sequence V
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

20) chain B
residue 40
type
sequence A
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

21) chain B
residue 41
type
sequence N
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

22) chain B
residue 42
type
sequence A
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

23) chain B
residue 43
type
sequence Y
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

24) chain B
residue 63
type
sequence A
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

25) chain B
residue 65
type
sequence A
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

26) chain B
residue 69
type
sequence E
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

27) chain B
residue 168
type
sequence H
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

28) chain B
residue 203
type
sequence N
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

29) chain B
residue 204
type
sequence S
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

30) chain B
residue 219
type
sequence R
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

31) chain B
residue 221
type
sequence G
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

32) chain B
residue 222
type
sequence I
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

33) chain B
residue 354
type
sequence Y
description binding site for Di-peptide EM2 B 401 and LYS B 39
source : AD5

34) chain B
residue 39
type ACT_SITE
sequence K
description Proton acceptor; specific for D-alanine => ECO:0000305|PubMed:22194336
source Swiss-Prot : SWS_FT_FI1

35) chain B
residue 265
type ACT_SITE
sequence Y
description Proton acceptor; specific for L-alanine => ECO:0000305|PubMed:22194336
source Swiss-Prot : SWS_FT_FI2

36) chain B
residue 138
type BINDING
sequence R
description BINDING => ECO:0000255|HAMAP-Rule:MF_01201
source Swiss-Prot : SWS_FT_FI3

37) chain B
residue 312
type BINDING
sequence M
description BINDING => ECO:0000305
source Swiss-Prot : SWS_FT_FI4

38) chain B
residue 39
type MOD_RES
sequence K
description N6-(pyridoxal phosphate)lysine
source Swiss-Prot : SWS_FT_FI5


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