eF-site ID 6g59-AB PDB Code 6g59 Chain A, B click to enlarge Title Structure of the alanine racemase from Staphylococcus aureus in complex with an pyridoxal-6- phosphate derivative Classification BIOSYNTHETIC PROTEIN Compound Alanine racemase 1 Source (ALR1_STAAM) Sequence A:  YKKAGFSDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVM AVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRM HGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAI KNISGEQEKKLWLHIKLDTGMGRLGIKDTNTYQEVIEIIQ QYEQLVFEGVFTHFACADEPGDMTTEQYQRFKDMVNEAIK PEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQ KVKVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPT TIALLPIGYADGYLRIMQGSFVNVNGHQCEVIGRVCMDQT IVKVPDQVKAGDSVILIDNHRESPQSVEVVAEKQHTINYE VLCNLSRRLPRIYHDGDQRFVTNELLK B:  AGFSDKYYRSAYMNVDLNAVASNFKVFSTLHPNKTVMAVV KANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGI TAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNI SGEQEKKLWLHIKLDTGMGRLGIKDTNTYQEVIEIIQQYE QLVFEGVFTHFACADEPGDMTTEQYQRFKDMVNEAIKPEY IHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQKVK VHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIA LLPIGYADGYLRIMQGSFVNVNGHQCEVIGRVCMDQTIVK VPDQVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVLC NLSRRLPRIYHDGDQRFVTNELLK Description Functional site 1) chain A residue 39 type sequence K description binding site for residue EM2 A 401 source : AC1 2) chain A residue 43 type sequence Y description binding site for residue EM2 A 401 source : AC1 3) chain A residue 168 type sequence H description binding site for residue EM2 A 401 source : AC1 4) chain A residue 203 type sequence N description binding site for residue EM2 A 401 source : AC1 5) chain A residue 204 type sequence S description binding site for residue EM2 A 401 source : AC1 6) chain A residue 219 type sequence R description binding site for residue EM2 A 401 source : AC1 7) chain A residue 221 type sequence G description binding site for residue EM2 A 401 source : AC1 8) chain A residue 222 type sequence I description binding site for residue EM2 A 401 source : AC1 9) chain A residue 354 type sequence Y description binding site for residue EM2 A 401 source : AC1 10) chain A residue -1 type sequence A description binding site for residue SO4 A 402 source : AC2 11) chain A residue 0 type sequence G description binding site for residue SO4 A 402 source : AC2 12) chain A residue 1 type sequence F description binding site for residue SO4 A 402 source : AC2 13) chain A residue 2 type sequence S description binding site for residue SO4 A 402 source : AC2 14) chain A residue 4 type sequence K description binding site for residue SO4 A 402 source : AC2 15) chain A residue 143 type sequence D description binding site for residue SO4 A 402 source : AC2 16) chain A residue 144 type sequence T description binding site for residue SO4 A 402 source : AC2 17) chain A residue 185 type sequence R description binding site for residue SO4 A 402 source : AC2 18) chain A residue 49 type sequence K description binding site for residue SO4 A 403 source : AC3 19) chain A residue 52 type sequence R description binding site for residue SO4 A 403 source : AC3 20) chain A residue 76 type sequence H description binding site for residue SO4 A 403 source : AC3 21) chain A residue 240 type sequence H description binding site for residue SO4 A 404 source : AC4 22) chain A residue 243 type sequence P description binding site for residue SO4 A 404 source : AC4 23) chain A residue 335 type sequence H description binding site for residue SO4 A 404 source : AC4 24) chain A residue 336 type sequence R description binding site for residue SO4 A 404 source : AC4 25) chain A residue 290 type sequence R description binding site for residue SO4 A 405 source : AC5 26) chain A residue 291 type sequence I description binding site for residue SO4 A 405 source : AC5 27) chain A residue 293 type sequence Q description binding site for residue SO4 A 405 source : AC5 28) chain A residue 309 type sequence R description binding site for residue SO4 A 405 source : AC5 29) chain A residue 154 type sequence I description binding site for residue NA A 406 source : AC6 30) chain A residue 157 type sequence Y description binding site for residue NA A 406 source : AC6 31) chain A residue 160 type sequence L description binding site for residue NA A 406 source : AC6 32) chain A residue 227 type sequence Y description binding site for residue NA A 407 source : AC7 33) chain A residue 245 type sequence V description binding site for residue NA A 407 source : AC7 34) chain A residue 333 type sequence D description binding site for residue NA A 407 source : AC7 35) chain A residue 334 type sequence N description binding site for residue NA A 407 source : AC7 36) chain A residue 342 type sequence V description binding site for residue NA A 407 source : AC7 37) chain A residue 262 type sequence S description binding site for residue NA A 408 source : AC8 38) chain A residue 264 type sequence S description binding site for residue NA A 408 source : AC8 39) chain B residue 135 type sequence G description binding site for residue NA A 408 source : AC8 40) chain B residue 136 type sequence M description binding site for residue NA A 408 source : AC8 41) chain B residue 170 type sequence A description binding site for residue NA A 408 source : AC8 42) chain A residue 29 type sequence H description binding site for residue CL A 409 source : AC9 43) chain A residue 30 type sequence P description binding site for residue CL A 409 source : AC9 44) chain A residue 31 type sequence N description binding site for residue CL A 409 source : AC9 45) chain B residue 240 type sequence H description binding site for residue SO4 B 402 source : AD1 46) chain B residue 243 type sequence P description binding site for residue SO4 B 402 source : AD1 47) chain B residue 335 type sequence H description binding site for residue SO4 B 402 source : AD1 48) chain B residue 336 type sequence R description binding site for residue SO4 B 402 source : AD1 49) chain B residue 5 type sequence Y description binding site for residue SO4 B 403 source : AD2 50) chain B residue 10 type sequence Y description binding site for residue SO4 B 403 source : AD2 51) chain B residue 367 type sequence I description binding site for residue SO4 B 403 source : AD2 52) chain B residue 374 type sequence R description binding site for residue SO4 B 403 source : AD2 53) chain B residue 154 type sequence I description binding site for residue NA B 404 source : AD3 54) chain B residue 157 type sequence Y description binding site for residue NA B 404 source : AD3 55) chain B residue 160 type sequence L description binding site for residue NA B 404 source : AD3 56) chain B residue 29 type sequence H description binding site for residue CL B 405 source : AD4 57) chain B residue 31 type sequence N description binding site for residue CL B 405 source : AD4 58) chain B residue 32 type sequence K description binding site for residue CL B 405 source : AD4 59) chain A residue 313 type sequence D description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 60) chain B residue 37 type sequence V description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 61) chain B residue 38 type sequence V description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 62) chain B residue 40 type sequence A description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 63) chain B residue 41 type sequence N description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 64) chain B residue 42 type sequence A description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 65) chain B residue 43 type sequence Y description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 66) chain B residue 63 type sequence A description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 67) chain B residue 65 type sequence A description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 68) chain B residue 69 type sequence E description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 69) chain B residue 168 type sequence H description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 70) chain B residue 203 type sequence N description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 71) chain B residue 204 type sequence S description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 72) chain B residue 219 type sequence R description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 73) chain B residue 221 type sequence G description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 74) chain B residue 222 type sequence I description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 75) chain B residue 354 type sequence Y description binding site for Di-peptide EM2 B 401 and LYS B 39 source : AD5 76) chain A residue 36-46 type prosite sequence AVVKANAYGLG description ALANINE_RACEMASE Alanine racemase pyridoxal-phosphate attachment site. AVvKANAYGLG source prosite : PS00395 77) chain A residue 39 type ACT_SITE sequence K description Proton acceptor; specific for D-alanine => ECO:0000305|PubMed:22194336 source Swiss-Prot : SWS_FT_FI1 78) chain B residue 39 type ACT_SITE sequence K description Proton acceptor; specific for D-alanine => ECO:0000305|PubMed:22194336 source Swiss-Prot : SWS_FT_FI1 79) chain A residue 265 type ACT_SITE sequence Y description Proton acceptor; specific for L-alanine => ECO:0000305|PubMed:22194336 source Swiss-Prot : SWS_FT_FI2 80) chain B residue 265 type ACT_SITE sequence Y description Proton acceptor; specific for L-alanine => ECO:0000305|PubMed:22194336 source Swiss-Prot : SWS_FT_FI2 81) chain A residue 138 type BINDING sequence R description BINDING => ECO:0000255|HAMAP-Rule:MF_01201 source Swiss-Prot : SWS_FT_FI3 82) chain B residue 138 type BINDING sequence R description BINDING => ECO:0000255|HAMAP-Rule:MF_01201 source Swiss-Prot : SWS_FT_FI3 83) chain A residue 312 type BINDING sequence M description BINDING => ECO:0000305 source Swiss-Prot : SWS_FT_FI4 84) chain B residue 312 type BINDING sequence M description BINDING => ECO:0000305 source Swiss-Prot : SWS_FT_FI4 85) chain A residue 39 type MOD_RES sequence K description N6-(pyridoxal phosphate)lysine source Swiss-Prot : SWS_FT_FI5 86) chain B residue 39 type MOD_RES sequence K description N6-(pyridoxal phosphate)lysine source Swiss-Prot : SWS_FT_FI5

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