eF-site ID 6fyy-k
PDB Code 6fyy
Chain k

click to enlarge
Title Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
Classification RIBOSOME
Compound tRNAi
Source ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; ORGANISM_COMMON: Yeast;
Sequence k:  QATINIGTIGHVAHGKSTVVRAISGVQTVRFKDELERNIT
IKLGYANAKIYKCQEEISPKCQRPGCPGRYKLVRHVSFVD
CPGHDILMSTMLSGAAVMDAALLLIAGNESCPQPQTSEHL
AAIEIMKLKHVIILQNKVDLMREESALEHQKSILKFIRGT
IADGAPIVPISAQLKYNIDAVNEFIVKTIPVPPRDFMISP
RLIVIRSFDVNKPGAEIEDLKGGVAGGSILNGVFKLGDEI
EIRPGIVTIQCKPIFSNIVSLFAEQNDLKFAVPGGLIGVG
TKVDPTLCRADRLVGQVVGAKGHLPNIYTDIEINYFLLRR
LLGVKKQAKVRKLEPNEVLMVNIGSTATGARVVAVKADMA
RLQLTSPACTEINEKIALSRRIEKHWRLIGWATIKK
Description


Functional site

1) chain k
residue 142
type
sequence Y
description binding site for residue MET k 601
source : AN7

2) chain k
residue 144
type
sequence N
description binding site for residue MET k 601
source : AN7

3) chain k
residue 321
type
sequence F
description binding site for residue MET k 601
source : AN7

4) chain k
residue 381
type
sequence F
description binding site for residue MET k 601
source : AN7

5) chain k
residue 382
type
sequence A
description binding site for residue MET k 601
source : AN7

6) chain k
residue 383
type
sequence E
description binding site for residue MET k 601
source : AN7

7) chain k
residue 395
type
sequence L
description binding site for residue MET k 601
source : AN7

8) chain k
residue 397
type
sequence G
description binding site for residue MET k 601
source : AN7

9) chain k
residue 137
type
sequence T
description binding site for residue MG k 602
source : AN8

10) chain k
residue 141
type
sequence G
description binding site for residue MG k 602
source : AN8

11) chain k
residue 108
type
sequence H
description binding site for residue GCP k 603
source : AN9

12) chain k
residue 109
type
sequence V
description binding site for residue GCP k 603
source : AN9

13) chain k
residue 110
type
sequence A
description binding site for residue GCP k 603
source : AN9

14) chain k
residue 111
type
sequence H
description binding site for residue GCP k 603
source : AN9

15) chain k
residue 112
type
sequence G
description binding site for residue GCP k 603
source : AN9

16) chain k
residue 113
type
sequence K
description binding site for residue GCP k 603
source : AN9

17) chain k
residue 115
type
sequence T
description binding site for residue GCP k 603
source : AN9

18) chain k
residue 136
type
sequence I
description binding site for residue GCP k 603
source : AN9

19) chain k
residue 196
type
sequence G
description binding site for residue GCP k 603
source : AN9

20) chain k
residue 249
type
sequence N
description binding site for residue GCP k 603
source : AN9

21) chain k
residue 285
type
sequence A
description binding site for residue GCP k 603
source : AN9

22) chain k
residue 286
type
sequence Q
description binding site for residue GCP k 603
source : AN9

23) chain k
residue 249
type MOD_RES
sequence N
description Phosphoserine => ECO:0000250|UniProtKB:P40217
source Swiss-Prot : SWS_FT_FI1

24) chain k
residue 284
type MOD_RES
sequence S
description Phosphoserine => ECO:0000250|UniProtKB:P40217
source Swiss-Prot : SWS_FT_FI1


Display surface

Download
Links