eF-site ID 6fyx-m
PDB Code 6fyx
Chain m

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Title Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
Classification RIBOSOME
Compound tRNAi
Source ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; ORGANISM_COMMON: Yeast;
Sequence m:  INICRDNHDPFYRYKMPPIQAKVEGRGNGIKTAVLNVADI
SHALNRPAPYIVKYFGFELGAQTSISVDKDRYLVNGVHEP
AKLQDVLDGFINKFVLCGSCKNPETEIIITKDNDLVRDCK
ACGKRTPMDLRHKLSSFILKNPPDSVS
Description (1)  30S ribosomal protein S2, 30S ribosomal protein S3, 30S ribosomal protein S4, 30S ribosomal protein S5, 30S ribosomal protein S6, 30S ribosomal protein S7, 30S ribosomal protein S8, 30S ribosomal protein S9, 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S13, 30S ribosomal protein S14 type Z, 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, 30S ribosomal protein S18, 30S ribosomal protein S19, 30S ribosomal protein S20, 30S ribosomal protein Thx, Translation initiation factor IF-1, Translation initiation factor IF-3/RNA Complex


Functional site

1) chain m
residue 30
type
sequence N
description binding site for residue MG 2 1893
source : AK8

2) chain m
residue 99
type
sequence C
description binding site for residue ZN m 501
source : AN9

3) chain m
residue 121
type
sequence C
description binding site for residue ZN m 501
source : AN9

4) chain m
residue 126
type
sequence K
description binding site for residue ZN m 501
source : AN9

5) chain m
residue 128
type
sequence T
description binding site for residue ZN m 501
source : AN9


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