eF-site ID 6fyx-k
PDB Code 6fyx
Chain k

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Title Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)
Classification RIBOSOME
Compound tRNAi
Source ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae; ORGANISM_COMMON: Yeast;
Sequence k:  LSAEIINRQATINIGTIGHVAHGKSTVVRAISGVQTVRFK
DELERNITIKLGYANAKIYKCQEFKSDKEISPKCQRPGCP
GRYKLVRHVSFVDCPGHDILMSTMLSGAAVMDAALLLIAG
NESCPQPQTSEHLAAIEIMKLKHVIILQNKVDLMREESAL
EHQKSILKFIRGTIADGAPIVPISAQLKYNIDAVNEFIVK
TIPVPPRDFMISPRLIVIRSFDVNKPGAEIEDLKGGVAGG
SILNGVFKLGDEIEIRPGIVTDDKGKIQCKPIFSNIVSLF
AEQNDLKFAVPGGLIGVGTKVDPTLCRADRLVGQVVGAKG
HLPNIYTDIEINYFLLRRLLGVKKQAKVRKLEPNEVLMVN
IGSTATGARVVAVKADMARLQLTSPACTEINEKIALSRRI
EKHWRLIGWATIKK
Description


Functional site

1) chain k
residue 142
type
sequence Y
description binding site for residue MET k 601
source : AN5

2) chain k
residue 144
type
sequence N
description binding site for residue MET k 601
source : AN5

3) chain k
residue 381
type
sequence F
description binding site for residue MET k 601
source : AN5

4) chain k
residue 382
type
sequence A
description binding site for residue MET k 601
source : AN5

5) chain k
residue 383
type
sequence E
description binding site for residue MET k 601
source : AN5

6) chain k
residue 395
type
sequence L
description binding site for residue MET k 601
source : AN5

7) chain k
residue 114
type
sequence S
description binding site for residue MG k 602
source : AN6

8) chain k
residue 137
type
sequence T
description binding site for residue MG k 602
source : AN6

9) chain k
residue 193
type
sequence D
description binding site for residue MG k 602
source : AN6

10) chain k
residue 108
type
sequence H
description binding site for residue GCP k 603
source : AN7

11) chain k
residue 109
type
sequence V
description binding site for residue GCP k 603
source : AN7

12) chain k
residue 111
type
sequence H
description binding site for residue GCP k 603
source : AN7

13) chain k
residue 112
type
sequence G
description binding site for residue GCP k 603
source : AN7

14) chain k
residue 113
type
sequence K
description binding site for residue GCP k 603
source : AN7

15) chain k
residue 114
type
sequence S
description binding site for residue GCP k 603
source : AN7

16) chain k
residue 115
type
sequence T
description binding site for residue GCP k 603
source : AN7

17) chain k
residue 127
type
sequence R
description binding site for residue GCP k 603
source : AN7

18) chain k
residue 135
type
sequence N
description binding site for residue GCP k 603
source : AN7

19) chain k
residue 136
type
sequence I
description binding site for residue GCP k 603
source : AN7

20) chain k
residue 196
type
sequence G
description binding site for residue GCP k 603
source : AN7

21) chain k
residue 249
type
sequence N
description binding site for residue GCP k 603
source : AN7

22) chain k
residue 250
type
sequence K
description binding site for residue GCP k 603
source : AN7

23) chain k
residue 285
type
sequence A
description binding site for residue GCP k 603
source : AN7

24) chain k
residue 286
type
sequence Q
description binding site for residue GCP k 603
source : AN7

25) chain k
residue 249
type MOD_RES
sequence N
description Phosphoserine => ECO:0007744|PubMed:18407956
source Swiss-Prot : SWS_FT_FI1

26) chain k
residue 284
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:18407956
source Swiss-Prot : SWS_FT_FI1


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