eF-site ID 6fxk-A
PDB Code 6fxk
Chain A

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Title Crystal Structure of full-length Human Lysyl Hydroxylase LH3
Classification TRANSFERASE
Compound Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3
Source (PLOD3_HUMAN)
Sequence A:  PVNPEKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLG
QKVRWLKKEMEKYADREDMIIMFVDSYDVILAGSPTELLK
KFVQSGSRLLFSAESFCWPEWGLAEQYPEVGTGKRFLNSG
GFIGFATTIHQIVRQWKYKDDDDDQLFYTRLYLDPGLREK
LSLNLDHKSRIFQNLNGALDEVVLKFDRNRVRIRNVAYDT
LPIVVHGNGPTKLQLNYLGNYVPNGWTPEGGCGFCNQDQP
PPRVFLAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFLHN
NEVFHEPHIADSWPQLQDHFSAVKLVGPEEALSPGEARDM
AMDLCRQDPECEFYFSLDADAVLTNLQTLRILIEENRKVI
APMLSRHGKLWSNFWGALSPDEYYARSEDYVELVQRKRVG
VWNVPYISQAYVIRGDTLRMELPQRDVFSGSDTDPDMAFC
KSFRDKGIFLHLSNQHEFGRLLATSRYDTEHLHPDLWQIF
DNPVDWKEQYIHENYSRALEGEGIVEQPCPDVYWFPLLSE
QMCDELVAEMEHYGQWSNVPTVDIHMKQVGYEDQWLQLLR
TYVGPMTESLFPGYHTKARAVMNFVVRYRPDEQPSLRPHH
DSSTFTLNVALNHKGLDYEGGGCRFLRYDCVISSPRKGWA
LLHPGRLTHYHEGLPTTWGTRYIMVSFVDP
Description (1)  Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 (E.C.1.14.11.4)


Functional site

1) chain A
residue 44
type BINDING
sequence V
description BINDING => ECO:0000269|PubMed:30089812, ECO:0007744|PDB:6FXY
source Swiss-Prot : SWS_FT_FI1

2) chain A
residue 112
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:30089812, ECO:0007744|PDB:6FXY
source Swiss-Prot : SWS_FT_FI1

3) chain A
residue 115
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:30089812, ECO:0007744|PDB:6FXY
source Swiss-Prot : SWS_FT_FI1

4) chain A
residue 253
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:30089812, ECO:0007744|PDB:6FXY
source Swiss-Prot : SWS_FT_FI1

5) chain A
residue 256
type BINDING
sequence G
description BINDING => ECO:0000269|PubMed:30089812, ECO:0007744|PDB:6FXY
source Swiss-Prot : SWS_FT_FI1

6) chain A
residue 656
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:30089812, ECO:0007744|PDB:6FXY
source Swiss-Prot : SWS_FT_FI1

7) chain A
residue 676
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:30089812, ECO:0007744|PDB:6FXY
source Swiss-Prot : SWS_FT_FI1

8) chain A
residue 729
type BINDING
sequence R
description BINDING => ECO:0000269|PubMed:30089812, ECO:0007744|PDB:6FXY
source Swiss-Prot : SWS_FT_FI1

9) chain A
residue 667
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00805, ECO:0000269|PubMed:30089812, ECO:0007744|PDB:6FXY
source Swiss-Prot : SWS_FT_FI2

10) chain A
residue 669
type BINDING
sequence D
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00805, ECO:0000269|PubMed:30089812, ECO:0007744|PDB:6FXY
source Swiss-Prot : SWS_FT_FI2

11) chain A
residue 719
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00805, ECO:0000269|PubMed:30089812, ECO:0007744|PDB:6FXY
source Swiss-Prot : SWS_FT_FI2

12) chain A
residue 63
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:30089812, ECO:0007744|PDB:6FXY
source Swiss-Prot : SWS_FT_FI3

13) chain A
residue 548
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:30089812, ECO:0007744|PDB:6FXY
source Swiss-Prot : SWS_FT_FI3

14) chain A
residue 666-673
type prosite
sequence PHHDSSTF
description LYS_HYDROXYLASE Lysyl hydroxylase signature. PHHDSSTF
source prosite : PS01325


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