eF-site ID 6fw3-C PDB Code 6fw3 Chain C click to enlarge Title Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-007 Classification HYDROLASE Compound cAMP-specific 3',5'-cyclic phosphodiesterase 4D Source (PDE4D_HUMAN) Sequence C:  TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTI FQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHA ADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHP GVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEEN CDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKT MVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKP LQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASV EKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREW YQSTIP Description Functional site 1) chain C residue 212 type sequence L description binding site for residue EDO A 504 source : AC4 2) chain C residue 215 type sequence T description binding site for residue EDO A 504 source : AC4 3) chain C residue 235 type sequence A description binding site for residue EDO A 505 source : AC5 4) chain C residue 151 type sequence D description binding site for residue PEG A 511 source : AD2 5) chain C residue 152 type sequence H description binding site for residue PEG A 511 source : AD2 6) chain C residue 152 type sequence H description binding site for residue EDO A 516 source : AD7 7) chain C residue 156 type sequence D description binding site for residue EDO A 524 source : AE6 8) chain C residue 218 type sequence E description binding site for residue EDO A 525 source : AE7 9) chain C residue 253 type sequence T description binding site for residue EPE B 507 source : AF5 10) chain C residue 254 type sequence K description binding site for residue EPE B 507 source : AF5 11) chain C residue 134 type sequence T description binding site for residue EDO B 515 source : AG4 12) chain C residue 135 type sequence F description binding site for residue EDO B 515 source : AG4 13) chain C residue 136 type sequence K description binding site for residue EDO B 515 source : AG4 14) chain C residue 251 type sequence N description binding site for residue EDO B 515 source : AG4 15) chain C residue 256 type sequence Q description binding site for residue EDO B 515 source : AG4 16) chain C residue 218 type sequence E description binding site for residue EDO C 501 source : AG7 17) chain C residue 255 type sequence K description binding site for residue EDO C 502 source : AG8 18) chain C residue 259 type sequence S description binding site for residue EDO C 502 source : AG8 19) chain C residue 164 type sequence H description binding site for residue ZN C 503 source : AG9 20) chain C residue 200 type sequence H description binding site for residue ZN C 503 source : AG9 21) chain C residue 201 type sequence D description binding site for residue ZN C 503 source : AG9 22) chain C residue 318 type sequence D description binding site for residue ZN C 503 source : AG9 23) chain C residue 201 type sequence D description binding site for residue MG C 504 source : AH1 24) chain C residue 115 type sequence N description binding site for residue EDO C 505 source : AH2 25) chain C residue 116 type sequence R description binding site for residue EDO C 505 source : AH2 26) chain C residue 150 type sequence E description binding site for residue EDO C 505 source : AH2 27) chain C residue 153 type sequence Y description binding site for residue EDO C 505 source : AH2 28) chain C residue 162 type sequence N description binding site for residue EDO C 505 source : AH2 29) chain C residue 208 type sequence S description binding site for residue EDO C 506 source : AH3 30) chain C residue 356 type sequence P description binding site for residue EDO C 506 source : AH3 31) chain C residue 358 type sequence C description binding site for residue EDO C 506 source : AH3 32) chain C residue 238 type sequence F description binding site for residue EDO C 507 source : AH4 33) chain C residue 249 type sequence F description binding site for residue EDO C 507 source : AH4 34) chain C residue 257 type sequence R description binding site for residue EDO C 507 source : AH4 35) chain C residue 261 type sequence R description binding site for residue EDO C 507 source : AH4 36) chain C residue 140 type sequence D description binding site for residue EDO C 508 source : AH5 37) chain C residue 141 type sequence T description binding site for residue EDO C 508 source : AH5 38) chain C residue 245 type sequence N description binding site for residue EDO C 508 source : AH5 39) chain C residue 175 type sequence L description binding site for residue EDO C 509 source : AH6 40) chain C residue 178 type sequence T description binding site for residue EDO C 509 source : AH6 41) chain C residue 384 type sequence W description binding site for residue EDO C 509 source : AH6 42) chain C residue 388 type sequence V description binding site for residue EDO C 509 source : AH6 43) chain C residue 391 type sequence D description binding site for residue EDO C 509 source : AH6 44) chain C residue 395 type sequence I description binding site for residue EDO C 509 source : AH6 45) chain C residue 154 type sequence H description binding site for residue EDO C 510 source : AH7 46) chain C residue 203 type sequence D description binding site for residue EDO C 510 source : AH7 47) chain C residue 105 type sequence H description binding site for residue EPE C 511 source : AH8 48) chain C residue 107 type sequence F description binding site for residue EPE C 511 source : AH8 49) chain C residue 108 type sequence R description binding site for residue EPE C 511 source : AH8 50) chain C residue 111 type sequence E description binding site for residue EPE C 511 source : AH8 51) chain C residue 327 type sequence Q description binding site for residue EPE C 511 source : AH8 52) chain C residue 328 type sequence L description binding site for residue EPE C 511 source : AH8 53) chain C residue 331 type sequence Q description binding site for residue EPE C 511 source : AH8 54) chain C residue 115 type sequence N description binding site for residue EDO C 512 source : AH9 55) chain C residue 155 type sequence A description binding site for residue EDO C 512 source : AH9 56) chain C residue 162 type sequence N description binding site for residue EDO C 512 source : AH9 57) chain C residue 335 type sequence R description binding site for residue EDO C 512 source : AH9 58) chain C residue 277 type sequence M description binding site for residue EDO C 513 source : AI1 59) chain C residue 210 type sequence Q description binding site for residue EDO C 514 source : AI2 60) chain C residue 325 type sequence P description binding site for residue EDO C 515 source : AI3 61) chain C residue 326 type sequence L description binding site for residue EDO C 515 source : AI3 62) chain C residue 401 type sequence D description binding site for residue EDO C 515 source : AI3 63) chain C residue 402 type sequence N description binding site for residue EDO C 515 source : AI3 64) chain C residue 152 type sequence H description binding site for residue EDO C 516 source : AI4 65) chain C residue 243 type sequence E description binding site for residue EDO C 516 source : AI4 66) chain C residue 128 type sequence E description binding site for residue EDO C 517 source : AI5 67) chain C residue 173 type sequence H description binding site for residue EDO C 517 source : AI5 68) chain C residue 177 type sequence S description binding site for residue EDO C 517 source : AI5 69) chain C residue 273 type sequence M description binding site for residue E8H C 518 source : AI6 70) chain C residue 321 type sequence N description binding site for residue E8H C 518 source : AI6 71) chain C residue 336 type sequence I description binding site for residue E8H C 518 source : AI6 72) chain C residue 357 type sequence M description binding site for residue E8H C 518 source : AI6 73) chain C residue 369 type sequence Q description binding site for residue E8H C 518 source : AI6 74) chain C residue 371 type sequence G description binding site for residue E8H C 518 source : AI6 75) chain C residue 372 type sequence F description binding site for residue E8H C 518 source : AI6 76) chain C residue 376 type sequence I description binding site for residue E8H C 518 source : AI6 77) chain C residue 223 type sequence Y description binding site for residue PG4 C 519 source : AI7 78) chain C residue 231 type sequence N description binding site for residue PG4 C 519 source : AI7 79) chain C residue 234 type sequence L description binding site for residue PG4 C 519 source : AI7 80) chain C residue 235 type sequence A description binding site for residue PG4 C 519 source : AI7 81) chain C residue 238 type sequence F description binding site for residue PG4 C 519 source : AI7 82) chain C residue 261 type sequence R description binding site for residue PG4 C 519 source : AI7 83) chain C residue 160 type ACT_SITE sequence H description Proton donor => ECO:0000250|UniProtKB:Q07343 source Swiss-Prot : SWS_FT_FI1 84) chain C residue 160 type BINDING sequence H description BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7 source Swiss-Prot : SWS_FT_FI2 85) chain C residue 321 type BINDING sequence N description BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7 source Swiss-Prot : SWS_FT_FI2 86) chain C residue 369 type BINDING sequence Q description BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7 source Swiss-Prot : SWS_FT_FI2 87) chain C residue 164 type BINDING sequence H description BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:2PW3 source Swiss-Prot : SWS_FT_FI3 88) chain C residue 200 type BINDING sequence H description BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:1XOR, ECO:0007744|PDB:2PW3 source Swiss-Prot : SWS_FT_FI4 89) chain C residue 318 type BINDING sequence D description BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:1XOR, ECO:0007744|PDB:2PW3 source Swiss-Prot : SWS_FT_FI4 90) chain C residue 201 type BINDING sequence D description BINDING => ECO:0000269|PubMed:14609333, ECO:0007744|PDB:1PTW source Swiss-Prot : SWS_FT_FI5 91) chain C residue 372 type BINDING sequence F description BINDING => ECO:0000269|PubMed:14609333, ECO:0007744|PDB:1PTW source Swiss-Prot : SWS_FT_FI5

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