eF-site ID 6fw3-B PDB Code 6fw3 Chain B click to enlarge Title Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-007 Classification HYDROLASE Compound cAMP-specific 3',5'-cyclic phosphodiesterase 4D Source (PDE4D_HUMAN) Sequence B:  EDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQE RDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADV VQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVS NQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDI FQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVE TKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQL YRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKS QVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQS TIP Description Functional site 1) chain B residue 408 type sequence S description binding site for residue EPE A 521 source : AE3 2) chain B residue 164 type sequence H description binding site for residue ZN B 501 source : AE8 3) chain B residue 200 type sequence H description binding site for residue ZN B 501 source : AE8 4) chain B residue 201 type sequence D description binding site for residue ZN B 501 source : AE8 5) chain B residue 318 type sequence D description binding site for residue ZN B 501 source : AE8 6) chain B residue 201 type sequence D description binding site for residue MG B 502 source : AE9 7) chain B residue 208 type sequence S description binding site for residue EDO B 503 source : AF1 8) chain B residue 340 type sequence F description binding site for residue EDO B 503 source : AF1 9) chain B residue 356 type sequence P description binding site for residue EDO B 503 source : AF1 10) chain B residue 358 type sequence C description binding site for residue EDO B 503 source : AF1 11) chain B residue 331 type sequence Q description binding site for residue EDO B 504 source : AF2 12) chain B residue 334 type sequence D description binding site for residue EDO B 504 source : AF2 13) chain B residue 335 type sequence R description binding site for residue EDO B 504 source : AF2 14) chain B residue 366 type sequence E description binding site for residue EDO B 505 source : AF3 15) chain B residue 409 type sequence T description binding site for residue EDO B 505 source : AF3 16) chain B residue 262 type sequence K description binding site for residue EDO B 506 source : AF4 17) chain B residue 266 type sequence D description binding site for residue EDO B 506 source : AF4 18) chain B residue 140 type sequence D description binding site for residue EPE B 507 source : AF5 19) chain B residue 141 type sequence T description binding site for residue EPE B 507 source : AF5 20) chain B residue 245 type sequence N description binding site for residue EPE B 507 source : AF5 21) chain B residue 290 type sequence K description binding site for residue EPE B 507 source : AF5 22) chain B residue 292 type sequence V description binding site for residue EPE B 507 source : AF5 23) chain B residue 218 type sequence E description binding site for residue EDO B 508 source : AF6 24) chain B residue 175 type sequence L description binding site for residue EDO B 509 source : AF7 25) chain B residue 178 type sequence T description binding site for residue EDO B 509 source : AF7 26) chain B residue 384 type sequence W description binding site for residue EDO B 509 source : AF7 27) chain B residue 391 type sequence D description binding site for residue EDO B 509 source : AF7 28) chain B residue 348 type sequence R description binding site for residue EDO B 510 source : AF8 29) chain B residue 360 type sequence K description binding site for residue EDO B 510 source : AF8 30) chain B residue 361 type sequence H description binding site for residue EDO B 510 source : AF8 31) chain B residue 115 type sequence N description binding site for residue EDO B 511 source : AF9 32) chain B residue 155 type sequence A description binding site for residue EDO B 511 source : AF9 33) chain B residue 161 type sequence N description binding site for residue EDO B 511 source : AF9 34) chain B residue 162 type sequence N description binding site for residue EDO B 511 source : AF9 35) chain B residue 335 type sequence R description binding site for residue EDO B 511 source : AF9 36) chain B residue 105 type sequence H description binding site for residue EPE B 512 source : AG1 37) chain B residue 106 type sequence V description binding site for residue EPE B 512 source : AG1 38) chain B residue 107 type sequence F description binding site for residue EPE B 512 source : AG1 39) chain B residue 108 type sequence R description binding site for residue EPE B 512 source : AG1 40) chain B residue 111 type sequence E description binding site for residue EPE B 512 source : AG1 41) chain B residue 327 type sequence Q description binding site for residue EPE B 512 source : AG1 42) chain B residue 328 type sequence L description binding site for residue EPE B 512 source : AG1 43) chain B residue 331 type sequence Q description binding site for residue EPE B 512 source : AG1 44) chain B residue 374 type sequence D description binding site for residue EDO B 513 source : AG2 45) chain B residue 378 type sequence H description binding site for residue EDO B 513 source : AG2 46) chain B residue 284 type sequence K description binding site for residue EDO B 514 source : AG3 47) chain B residue 287 type sequence V description binding site for residue EDO B 514 source : AG3 48) chain B residue 288 type sequence E description binding site for residue EDO B 514 source : AG3 49) chain B residue 383 type sequence T description binding site for residue EDO B 514 source : AG3 50) chain B residue 386 type sequence D description binding site for residue EDO B 514 source : AG3 51) chain B residue 389 type sequence H description binding site for residue EDO B 515 source : AG4 52) chain B residue 390 type sequence P description binding site for residue EDO B 515 source : AG4 53) chain B residue 210 type sequence Q description binding site for residue EDO B 516 source : AG5 54) chain B residue 273 type sequence M description binding site for residue E8H B 517 source : AG6 55) chain B residue 319 type sequence L description binding site for residue E8H B 517 source : AG6 56) chain B residue 321 type sequence N description binding site for residue E8H B 517 source : AG6 57) chain B residue 336 type sequence I description binding site for residue E8H B 517 source : AG6 58) chain B residue 357 type sequence M description binding site for residue E8H B 517 source : AG6 59) chain B residue 368 type sequence S description binding site for residue E8H B 517 source : AG6 60) chain B residue 369 type sequence Q description binding site for residue E8H B 517 source : AG6 61) chain B residue 372 type sequence F description binding site for residue E8H B 517 source : AG6 62) chain B residue 179 type sequence P description binding site for residue EDO C 502 source : AG8 63) chain B residue 349 type sequence E description binding site for residue EDO D 501 source : AI8 64) chain B residue 350 type sequence R description binding site for residue EDO D 501 source : AI8 65) chain B residue 214 type sequence N description binding site for residue EDO D 502 source : AI9 66) chain B residue 156 type sequence D description binding site for residue PEG D 509 source : AJ7 67) chain B residue 215 type sequence T description binding site for residue EDO D 511 source : AJ9 68) chain B residue 160 type ACT_SITE sequence H description Proton donor => ECO:0000250|UniProtKB:Q07343 source Swiss-Prot : SWS_FT_FI1 69) chain B residue 160 type BINDING sequence H description BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7 source Swiss-Prot : SWS_FT_FI2 70) chain B residue 321 type BINDING sequence N description BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7 source Swiss-Prot : SWS_FT_FI2 71) chain B residue 369 type BINDING sequence Q description BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7 source Swiss-Prot : SWS_FT_FI2 72) chain B residue 164 type BINDING sequence H description BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:2PW3 source Swiss-Prot : SWS_FT_FI3 73) chain B residue 200 type BINDING sequence H description BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:1XOR, ECO:0007744|PDB:2PW3 source Swiss-Prot : SWS_FT_FI4 74) chain B residue 318 type BINDING sequence D description BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:1XOR, ECO:0007744|PDB:2PW3 source Swiss-Prot : SWS_FT_FI4 75) chain B residue 201 type BINDING sequence D description BINDING => ECO:0000269|PubMed:14609333, ECO:0007744|PDB:1PTW source Swiss-Prot : SWS_FT_FI5 76) chain B residue 372 type BINDING sequence F description BINDING => ECO:0000269|PubMed:14609333, ECO:0007744|PDB:1PTW source Swiss-Prot : SWS_FT_FI5

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