eF-site ID 6ftg-5 PDB Code 6ftg Chain 5 click to enlarge Title Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes Classification PROTEIN TRANSPORT Compound uL2 Source ORGANISM_COMMON: Rabbit; ORGANISM_SCIENTIFIC: Oryctolagus cuniculus; Sequence 5:  MTKLGFLRLSYEKQDTLLKLLILSMAAVLSFSTRLFAVLR FESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDRAWYPL GRIIGGTLYPGLMITSAAIYHVLHFFHDIRNVCVFLAPLF SSFTTIVTYHLTKELKDAGAGLLAAAMIAVVPGYISRSVA GSYDNEGIAIFCMLLTYYMWIKAVKTGSIYWAAKCALAYF YMVSSWGGYVFLINLIPLHVLVLMLTGRFSHRIYVAYCTV YCLGTILSMQISFVGFQPVLSSEHMAAFGVFGLCQIHAFV DYLRSKLNPQQFEVLFRSVISLVGFVLLTVGALLMLIIAS VSEHQPTTWSSYYFDLQLLVFMFPVGLYYCFSNLSDARIF IIMYGVTSMYFSAVMVRLMLVLAPVMCILSGIGVSQVLST YMKNLDIEVASGMILVMAFFLITYTFHSTWVTSEAYSSPS IVLSARGGDGSRIIFDDFREAYYWLRHNTPEDAKVMSWWD YGYQITAMANRTILVDNNTWNNTHISRVGQAMASTEEKAY EIMRELDVSYVLVIFGGLTGYSSDDINKFLWMVRIGGSTD TGKHIKEHDYYTPTGEFRVDREGSPVLLNCLMYKMCYYRF GQVYTEAKDRVRNAEIGNKDFELDVLEEAYTTEHWLVRIY KVKD Description (1)  Uncharacterized protein, Ribosomal protein L4, 60S ribosomal protein L5, 60S ribosomal protein L6, Ribosomal protein L10 (Predicted), Ribosomal protein L11, eL13, Ribosomal protein L14, Ribosomal protein L15, uL13, uL22, uL14, eL19, eL20, eL22, Ribosomal protein L24, Ribosomal protein L26, 60S ribosomal protein L27, 60S ribosomal protein L29, eL30, eL32, eL33, 60S ribosomal protein L36, Ribosomal protein L37, eL38, eL39, eL40, 60s ribosomal protein l41, Ribosomal protein L37a, 60S acidic ribosomal protein P0, Ribosomal protein L12, Protein transport protein Sec61 subunit alpha isoform 1, Protein transport protein Sec61 subunit gamma, Protein transport protein Sec61 subunit beta, Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1, TMEM258, Oligosaccharyltransferase complex subunit OSTC, OST4, Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A, DAD1, OST48, RPN2/RNA Complex Functional site 1) chain 5 residue 1-17 type TOPO_DOM sequence MTKLGFLRLSYEKQDTL description Cytoplasmic => ECO:0000305 source Swiss-Prot : SWS_FT_FI1 2) chain 5 residue 139-140 type TOPO_DOM sequence KD description Cytoplasmic => ECO:0000305 source Swiss-Prot : SWS_FT_FI1 3) chain 5 residue 190-191 type TOPO_DOM sequence GS description Cytoplasmic => ECO:0000305 source Swiss-Prot : SWS_FT_FI1 4) chain 5 residue 229-233 type TOPO_DOM sequence TGRFS description Cytoplasmic => ECO:0000305 source Swiss-Prot : SWS_FT_FI1 5) chain 5 residue 288-300 type TOPO_DOM sequence SKLNPQQFEVLFR description Cytoplasmic => ECO:0000305 source Swiss-Prot : SWS_FT_FI1 6) chain 5 residue 380-385 type TOPO_DOM sequence SNLSDA description Cytoplasmic => ECO:0000305 source Swiss-Prot : SWS_FT_FI1 7) chain 5 residue 548 type CARBOHYD sequence N description N-linked (GlcNAc...) (high mannose) asparagine => ECO:0000250|UniProtKB:P39007 source Swiss-Prot : SWS_FT_FI9 8) chain 5 residue 49 type BINDING sequence D description BINDING => ECO:0000250|UniProtKB:B9KDD4 source Swiss-Prot : SWS_FT_FI5 9) chain 5 residue 167 type BINDING sequence D description BINDING => ECO:0000250|UniProtKB:B9KDD4 source Swiss-Prot : SWS_FT_FI5 10) chain 5 residue 169 type BINDING sequence E description BINDING => ECO:0000250|UniProtKB:B9KDD4 source Swiss-Prot : SWS_FT_FI5 11) chain 5 residue 405 type BINDING sequence R description BINDING => ECO:0000250|UniProtKB:B9KDD4 source Swiss-Prot : SWS_FT_FI5 12) chain 5 residue 530 type BINDING sequence Y description BINDING => ECO:0000250|UniProtKB:B9KDD4 source Swiss-Prot : SWS_FT_FI5 13) chain 5 residue 49 type SITE sequence D description Interacts with target acceptor peptide in protein substrate => ECO:0000250|UniProtKB:B9KDD4 source Swiss-Prot : SWS_FT_FI6 14) chain 5 residue 351 type SITE sequence E description Interacts with target acceptor peptide in protein substrate => ECO:0000250|UniProtKB:B9KDD4 source Swiss-Prot : SWS_FT_FI6 15) chain 5 residue 595 type SITE sequence K description Interacts with target acceptor peptide in protein substrate => ECO:0000250|UniProtKB:B9KDD4 source Swiss-Prot : SWS_FT_FI6 16) chain 5 residue 160 type SITE sequence R description Important for catalytic activity => ECO:0000250|UniProtKB:B9KDD4 source Swiss-Prot : SWS_FT_FI7 17) chain 5 residue 537 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00498 source Swiss-Prot : SWS_FT_FI8 18) chain 5 residue 544 type CARBOHYD sequence N description N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00498 source Swiss-Prot : SWS_FT_FI8 19) chain 5 residue 18-38 type TRANSMEM sequence LKLLILSMAAVLSFSTRLFAV description Helical => ECO:0000255 source Swiss-Prot : SWS_FT_FI2 20) chain 5 residue 39-119 type TOPO_DOM sequence LRFESVIHEFDPYFNYRTTRFLAEEGFYKFHNWFDDRAWY PLGRIIGGTLYPGLMITSAAIYHVLHFFHDIRNVCVFL description Lumenal => ECO:0000305 source Swiss-Prot : SWS_FT_FI3 21) chain 5 residue 159-169 type TOPO_DOM sequence SRSVAGSYDNE description Lumenal => ECO:0000305 source Swiss-Prot : SWS_FT_FI3 22) chain 5 residue 207-211 type TOPO_DOM sequence SSWGG description Lumenal => ECO:0000305 source Swiss-Prot : SWS_FT_FI3 23) chain 5 residue 260-267 type TOPO_DOM sequence QPVLSSEH description Lumenal => ECO:0000305 source Swiss-Prot : SWS_FT_FI3 24) chain 5 residue 403-406 type TOPO_DOM sequence MVRL description Lumenal => ECO:0000305 source Swiss-Prot : SWS_FT_FI3 25) chain 5 residue 120-138 type TRANSMEM sequence APLFSSFTTIVTYHLTKEL description Helical => ECO:0000250|UniProtKB:P39007 source Swiss-Prot : SWS_FT_FI4 26) chain 5 residue 407-428 type TRANSMEM sequence MLVLAPVMCILSGIGVSQVLST description Helical => ECO:0000250|UniProtKB:P39007 source Swiss-Prot : SWS_FT_FI4 27) chain 5 residue 141-158 type TRANSMEM sequence AGAGLLAAAMIAVVPGYI description Helical => ECO:0000250|UniProtKB:P39007 source Swiss-Prot : SWS_FT_FI4 28) chain 5 residue 170-189 type TRANSMEM sequence GIAIFCMLLTYYMWIKAVKT description Helical => ECO:0000250|UniProtKB:P39007 source Swiss-Prot : SWS_FT_FI4 29) chain 5 residue 192-206 type TRANSMEM sequence IYWAAKCALAYFYMV description Helical => ECO:0000250|UniProtKB:P39007 source Swiss-Prot : SWS_FT_FI4 30) chain 5 residue 212-228 type TRANSMEM sequence YVFLINLIPLHVLVLML description Helical => ECO:0000250|UniProtKB:P39007 source Swiss-Prot : SWS_FT_FI4 31) chain 5 residue 234-259 type TRANSMEM sequence HRIYVAYCTVYCLGTILSMQISFVGF description Helical => ECO:0000250|UniProtKB:P39007 source Swiss-Prot : SWS_FT_FI4 32) chain 5 residue 268-287 type TRANSMEM sequence MAAFGVFGLCQIHAFVDYLR description Helical => ECO:0000250|UniProtKB:P39007 source Swiss-Prot : SWS_FT_FI4 33) chain 5 residue 357-379 type TRANSMEM sequence WSSYYFDLQLLVFMFPVGLYYCF description Helical => ECO:0000250|UniProtKB:P39007 source Swiss-Prot : SWS_FT_FI4 34) chain 5 residue 386-402 type TRANSMEM sequence RIFIIMYGVTSMYFSAV description Helical => ECO:0000250|UniProtKB:P39007 source Swiss-Prot : SWS_FT_FI4

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