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eF-site ID
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6fq3-AB |
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PDB Code
|
6fq3 |
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Chain
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A, B |
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click to enlarge
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Title
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Crystal structure of Danio rerio Lin41 filamin-NHL domains in complex with lin-29A 5'UTR 13mer RNA |
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Classification
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RNA BINDING PROTEIN |
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Compound
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E3 ubiquitin-protein ligase TRIM71 |
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Source
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Danio rerio (Zebrafish) (Brachydanio rerio) (6FQ3) |
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Sequence
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A: |
SSGAFATASKAHGEGIKRALQGKPASFTVVGYDHDGEPRL
SGGDSVSVVLMSPDGNLSSAEVSDHQDGTYTVSYLPKGEG
EHLLSVLICNQHIEGSPFKVMVKSGRSYGGVGLPMASFGG
EGDGDGQLCRPWGICVDKEGYVVVADRSNNRVQIFKPCGT
FHHKFGTLGSRPGQFDRPAGVACDSQRRIIVADKDNHRIQ
IFTFDGQFLLKFGEKGTKNGQFNYPWDVAVNFEGKILVSD
TRNHRVQLFGPDGTFLNKYGFEGALWKHFDSPRGVAFNQE
GHLVVTDFNNHRLLVIRPDCQSARFLGSEGTGNGQFLRPQ
GVAVDQEDRIIVADSRNHRIQVFEPNGNFLCKFGTHGNGF
GQMDRPSGIAVTPDGVIVAVDFGNNRILMF
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| B: |
GGAGUCCAACUCC
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Description
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Functional site
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1)
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chain |
A |
| residue |
678 |
| type |
|
| sequence |
H
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| description |
binding site for residue CL A 902
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| source |
: AC1
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2)
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chain |
A |
| residue |
555 |
| type |
|
| sequence |
E
|
| description |
binding site for residue CL A 904
|
| source |
: AC2
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3)
|
chain |
A |
| residue |
653 |
| type |
|
| sequence |
N
|
| description |
binding site for residue CL A 905
|
| source |
: AC3
|
|
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4)
|
chain |
A |
| residue |
694 |
| type |
|
| sequence |
G
|
| description |
binding site for residue CL A 906
|
| source |
: AC4
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|
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5)
|
chain |
A |
| residue |
726 |
| type |
|
| sequence |
R
|
| description |
binding site for residue CL A 907
|
| source |
: AC5
|
|
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6)
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chain |
B |
| residue |
9 |
| type |
|
| sequence |
A
|
| description |
binding site for residue CL B 101
|
| source |
: AC6
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