eF-site ID 6fmx-A
PDB Code 6fmx
Chain A

click to enlarge
Title IMISX-EP of W-PgpB
Classification HYDROLASE
Compound Phosphatidylglycerophosphatase B
Source (PGPB_BACSU)
Sequence A:  MYKPVSLFLFFLILAAAIHTNAVQSADEAISKAAVLIRQP
WLNEVMTGITHLGASSFLLPLIVIIGAGMFFYRKTWDGLL
MLLVFGTDRLLNKVLKEWIERVRPDFAPLVHESSFSFPSG
HSMNAACVYPVIAYFLVKHLPFLSKHKKMVYIIAGVIAVL
VGISRVYLGVHFVTDVLGGFSLGLLLFFLVKGFDEKIKRF
R
Description (1)  Phosphatidylglycerophosphatase B (E.C.3.1.3.27)


Functional site

1) chain A
residue 51
type
sequence H
description binding site for residue OLC A 301
source : AC1

2) chain A
residue 56
type
sequence S
description binding site for residue OLC A 301
source : AC1

3) chain A
residue 57
type
sequence F
description binding site for residue OLC A 301
source : AC1

4) chain A
residue 60
type
sequence P
description binding site for residue OLC A 301
source : AC1

5) chain A
residue 68
type
sequence G
description binding site for residue OLC A 301
source : AC1

6) chain A
residue 69
type
sequence M
description binding site for residue OLC A 301
source : AC1

7) chain A
residue 6
type
sequence S
description binding site for residue OLC A 302
source : AC2

8) chain A
residue 10
type
sequence F
description binding site for residue OLC A 302
source : AC2

9) chain A
residue 13
type
sequence I
description binding site for residue OLC A 302
source : AC2

10) chain A
residue 14
type
sequence L
description binding site for residue OLC A 302
source : AC2

11) chain A
residue 17
type
sequence A
description binding site for residue OLC A 302
source : AC2

12) chain A
residue 20
type
sequence T
description binding site for residue OLC A 302
source : AC2

13) chain A
residue 76
type
sequence W
description binding site for residue OLC A 302
source : AC2

14) chain A
residue 12
type
sequence L
description binding site for residue OLC A 303
source : AC3

15) chain A
residue 19
type
sequence H
description binding site for residue OLC A 303
source : AC3

16) chain A
residue 83
type
sequence L
description binding site for residue OLC A 304
source : AC4

17) chain A
residue 86
type
sequence G
description binding site for residue OLC A 304
source : AC4

18) chain A
residue 87
type
sequence T
description binding site for residue OLC A 304
source : AC4

19) chain A
residue 90
type
sequence L
description binding site for residue OLC A 304
source : AC4

20) chain A
residue 193
type
sequence F
description binding site for residue OLC A 304
source : AC4

21) chain A
residue 55
type
sequence S
description binding site for residue OLC A 305
source : AC5

22) chain A
residue 79
type
sequence L
description binding site for residue OLC A 305
source : AC5

23) chain A
residue 82
type
sequence L
description binding site for residue OLC A 305
source : AC5

24) chain A
residue 83
type
sequence L
description binding site for residue OLC A 305
source : AC5

25) chain A
residue 85
type
sequence F
description binding site for residue OLC A 305
source : AC5

26) chain A
residue 89
type
sequence R
description binding site for residue OLC A 305
source : AC5

27) chain A
residue 89
type
sequence R
description binding site for residue WO4 A 306
source : AC6

28) chain A
residue 96
type
sequence K
description binding site for residue WO4 A 306
source : AC6

29) chain A
residue 103
type
sequence R
description binding site for residue WO4 A 306
source : AC6

30) chain A
residue 119
type
sequence S
description binding site for residue WO4 A 306
source : AC6

31) chain A
residue 120
type
sequence G
description binding site for residue WO4 A 306
source : AC6

32) chain A
residue 121
type
sequence H
description binding site for residue WO4 A 306
source : AC6

33) chain A
residue 165
type
sequence R
description binding site for residue WO4 A 306
source : AC6

34) chain A
residue 171
type
sequence H
description binding site for residue WO4 A 306
source : AC6

35) chain A
residue 1
type TOPO_DOM
sequence M
description Cytoplasmic => ECO:0000305|PubMed:28168443
source Swiss-Prot : SWS_FT_FI1

36) chain A
residue 75-78
type TOPO_DOM
sequence TWDG
description Cytoplasmic => ECO:0000305|PubMed:28168443
source Swiss-Prot : SWS_FT_FI1

37) chain A
residue 140-146
type TOPO_DOM
sequence LPFLSKH
description Cytoplasmic => ECO:0000305|PubMed:28168443
source Swiss-Prot : SWS_FT_FI1

38) chain A
residue 2-17
type TRANSMEM
sequence YKPVSLFLFFLILAAA
description Helical => ECO:0000269|PubMed:28168443
source Swiss-Prot : SWS_FT_FI2

39) chain A
residue 56-74
type TRANSMEM
sequence SFLLPLIVIIGAGMFFYRK
description Helical => ECO:0000269|PubMed:28168443
source Swiss-Prot : SWS_FT_FI2

40) chain A
residue 79-99
type TRANSMEM
sequence LLMLLVFGTDRLLNKVLKEWI
description Helical => ECO:0000269|PubMed:28168443
source Swiss-Prot : SWS_FT_FI2

41) chain A
residue 120-139
type TRANSMEM
sequence GHSMNAACVYPVIAYFLVKH
description Helical => ECO:0000269|PubMed:28168443
source Swiss-Prot : SWS_FT_FI2

42) chain A
residue 147-167
type TRANSMEM
sequence KKMVYIIAGVIAVLVGISRVY
description Helical => ECO:0000269|PubMed:28168443
source Swiss-Prot : SWS_FT_FI2

43) chain A
residue 173-196
type TRANSMEM
sequence VTDVLGGFSLGLLLFFLVKGFDEK
description Helical => ECO:0000269|PubMed:28168443
source Swiss-Prot : SWS_FT_FI2

44) chain A
residue 18-55
type TOPO_DOM
sequence IHTNAVQSADEAISKAAVLIRQPWLNEVMTGITHLGAS
description Extracellular => ECO:0000305|PubMed:28168443
source Swiss-Prot : SWS_FT_FI3

45) chain A
residue 100-119
type TOPO_DOM
sequence ERVRPDFAPLVHESSFSFPS
description Extracellular => ECO:0000305|PubMed:28168443
source Swiss-Prot : SWS_FT_FI3

46) chain A
residue 168-172
type TOPO_DOM
sequence LGVHF
description Extracellular => ECO:0000305|PubMed:28168443
source Swiss-Prot : SWS_FT_FI3

47) chain A
residue 121
type ACT_SITE
sequence H
description Proton donors => ECO:0000305|PubMed:28168443
source Swiss-Prot : SWS_FT_FI4

48) chain A
residue 171
type ACT_SITE
sequence H
description Nucleophile => ECO:0000305|PubMed:28168443
source Swiss-Prot : SWS_FT_FI5

49) chain A
residue 175
type SITE
sequence D
description Stabilizes the active site histidine for nucleophilic attack => ECO:0000305|PubMed:28168443
source Swiss-Prot : SWS_FT_FI6


Display surface

Download
Links